RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 CACNG8Q8WXS5 425 aa9.03□□□□□ -0.96
SKA3-203ENST00000400018 ALKBH7Q9BT30 221 aaPredicted RBP9.03□□□□□ -0.96
SKA3-203ENST00000400018 MAP1LC3B2A6NCE7 125 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 RBFOX3A6NFN3 312 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 CD28P10747 220 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 ATP5G2Q06055 141 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 TMEM41BQ5BJD5 291 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 OR5AU1Q8NGC0 362 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 OR4X2Q8NGF9 303 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 ZNF502Q8TBZ5 544 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 BLNKQ8WV28 456 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 SGK494Q96LW2 274 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 NIPSNAP3BQ9BS92 247 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 MAP1LC3BQ9GZQ8 125 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 FCGR2BP31994 310 aaPredicted RBP9.02□□□□□ -0.97
SKA3-203ENST00000400018 CDC34P49427 236 aaPredicted RBP9.02□□□□□ -0.97
SKA3-203ENST00000400018 MFAP4P55083 255 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 CFHR3Q02985 330 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 COL5A1-AS1Q5SY13 56 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 Q6ZVH6 145 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 LINC00305Q7Z4B0 112 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 GBGT1Q8N5D6 347 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 LINC01006Q8NI28 216 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 ZNF503Q96F45 646 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 RNF24Q9Y225 148 aa9.02□□□□□ -0.97
SKA3-203ENST00000400018 OR7C2O60412 319 aa9.01□□□□□ -0.97
SKA3-203ENST00000400018 SRP19P09132 144 aaKnown RBP9.01□□□□□ -0.97
SKA3-203ENST00000400018 CD33P20138 364 aa9.01□□□□□ -0.97
SKA3-203ENST00000400018 PVRIGQ6DKI7 326 aa9.01□□□□□ -0.97
SKA3-203ENST00000400018 TMEM18Q96B42 140 aa9.01□□□□□ -0.97
SKA3-203ENST00000400018 VAX2Q9UIW0 290 aa9.01□□□□□ -0.97
SKA3-203ENST00000400018 A0A1W2PPV4 95 aa9.01□□□□□ -0.97
SKA3-203ENST00000400018 K7EP13 123 aa9.01□□□□□ -0.97
SKA3-203ENST00000400018 PSMB8P28062 276 aa9.01□□□□□ -0.97
SKA3-203ENST00000400018 KRTAP10-3P60369 221 aa9.01□□□□□ -0.97
SKA3-203ENST00000400018 C16orf82Q7Z2V1 217 aa9.01□□□□□ -0.97
SKA3-203ENST00000400018 ZNF418Q8TF45 676 aaPredicted RBP9.01□□□□□ -0.97
SKA3-203ENST00000400018 CLUHP3Q96NS8 147 aa9.01□□□□□ -0.97
SKA3-203ENST00000400018 NAGKQ9UJ70 344 aa9.01□□□□□ -0.97
SKA3-203ENST00000400018 C17orf112F2Z3M2 114 aa9□□□□□ -0.97
SKA3-203ENST00000400018 COX7A2P2O60397 106 aa9□□□□□ -0.97
SKA3-203ENST00000400018 IGLV1-40P01703 118 aa9□□□□□ -0.97
SKA3-203ENST00000400018 HILS1P60008 231 aa9□□□□□ -0.97
SKA3-203ENST00000400018 ZNF491Q8N8L2 437 aa9□□□□□ -0.97
SKA3-203ENST00000400018 NECAP1Q8NC96 275 aa9□□□□□ -0.97
SKA3-203ENST00000400018 AURKAIP1Q9NWT8 199 aaPredicted RBP9□□□□□ -0.97
SKA3-203ENST00000400018 TOMM20LQ6UXN7 152 aa9□□□□□ -0.97
SKA3-203ENST00000400018 C8orf86Q6ZUL3 223 aa9□□□□□ -0.97
SKA3-203ENST00000400018 THAP8Q8NA92 274 aa9□□□□□ -0.97
SKA3-203ENST00000400018 MIEN1Q9BRT3 115 aa9□□□□□ -0.97
SKA3-203ENST00000400018 PSMG3Q9BT73 122 aaPredicted RBP9□□□□□ -0.97
SKA3-203ENST00000400018 CLDN34H7C241 214 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 CRLF1O75462 422 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 ARL3P36405 182 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 ATP5G3P48201 142 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 SLURP1P55000 103 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 DEFB1P60022 68 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 TM4SF20Q53R12 229 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 SPATA3Q8NHX4 192 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 NUDT11Q96G61 164 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 CITED2Q99967 270 aaPredicted RBP8.99□□□□□ -0.97
SKA3-203ENST00000400018 IGHV4OR15-8A0A075B7B6 117 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 A0A087WW49 117 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 BMPR1BO00238 502 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 PAGE4O60829 102 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 RAB31Q13636 194 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 ACOT6Q3I5F7 207 aaPredicted RBP8.99□□□□□ -0.97
SKA3-203ENST00000400018 C10orf113Q5VZT2 155 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 SLC25A2Q9BXI2 301 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 THYN1Q9P016 225 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 PAM16Q9Y3D7 125 aa8.99□□□□□ -0.97
SKA3-203ENST00000400018 CORTO00230 105 aa8.98□□□□□ -0.97
SKA3-203ENST00000400018 SERF2P84101 59 aa8.98□□□□□ -0.97
SKA3-203ENST00000400018 MRPL52Q86TS9 123 aaKnown RBP8.98□□□□□ -0.97
SKA3-203ENST00000400018 STPG4Q8N801 248 aa8.98□□□□□ -0.97
SKA3-203ENST00000400018 RNF125Q96EQ8 232 aa8.98□□□□□ -0.97
SKA3-203ENST00000400018 CSTL1Q9H114 145 aa8.98□□□□□ -0.97
SKA3-203ENST00000400018 IGHG4P01861 327 aa8.98□□□□□ -0.97
SKA3-203ENST00000400018 PPBPP02775 128 aa8.98□□□□□ -0.97
SKA3-203ENST00000400018 HLA-DMBP28068 263 aa8.98□□□□□ -0.97
SKA3-203ENST00000400018 NSUN5P1Q3KNT7 163 aa8.98□□□□□ -0.97
SKA3-203ENST00000400018 COA6Q5JTJ3 125 aaKnown RBP8.98□□□□□ -0.97
SKA3-203ENST00000400018 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.98□□□□□ -0.97
SKA3-203ENST00000400018 EEF1AKMT3Q96AZ1 226 aa8.98□□□□□ -0.97
SKA3-203ENST00000400018 TRBV24-1A0A075B6N3 115 aa8.97□□□□□ -0.97
SKA3-203ENST00000400018 LOC102724200A0A096LPH7 203 aaPredicted RBP8.97□□□□□ -0.97
SKA3-203ENST00000400018 CST9LP1Q5W188 147 aa8.97□□□□□ -0.97
SKA3-203ENST00000400018 YTHDF2Q9Y5A9 579 aaKnown RBP8.97□□□□□ -0.97
SKA3-203ENST00000400018 SYNJ2BPP57105 145 aa8.97□□□□□ -0.97
SKA3-203ENST00000400018 ICAM4Q14773 271 aa8.97□□□□□ -0.97
SKA3-203ENST00000400018 S100A7AQ86SG5 101 aa8.97□□□□□ -0.97
SKA3-203ENST00000400018 FAM167A-AS1Q96KT0 104 aa8.97□□□□□ -0.97
SKA3-203ENST00000400018 TRGV9Q99603 122 aa8.97□□□□□ -0.97
SKA3-203ENST00000400018 SRSF8Q9BRL6 282 aaKnown RBP8.97□□□□□ -0.97
SKA3-203ENST00000400018 DERL1Q9BUN8 251 aa8.97□□□□□ -0.97
SKA3-203ENST00000400018 SLC25A39Q9BZJ4 359 aaPredicted RBP8.97□□□□□ -0.97
SKA3-203ENST00000400018 A0A1B0GUS0 222 aa8.96□□□□□ -0.97
SKA3-203ENST00000400018 CLPSL1A2RUU4 121 aa8.96□□□□□ -0.97
SKA3-203ENST00000400018 PGPEP1LA6NFU8 196 aa8.96□□□□□ -0.97
SKA3-203ENST00000400018 MPDU1O75352 247 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms