RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 C7orf71A4D174 169 aa12.91□□□□□ -0.34
PCDH1-203ENST00000394536 RPL7P18124 248 aaKnown RBP12.91□□□□□ -0.34
PCDH1-203ENST00000394536 CR1LQ2VPA4 569 aa12.91□□□□□ -0.34
PCDH1-203ENST00000394536 E7EQL1 145 aa12.91□□□□□ -0.34
PCDH1-203ENST00000394536 PRR30Q53SZ7 412 aaPredicted RBP12.91□□□□□ -0.34
PCDH1-203ENST00000394536 GDF5OSQ5U4N7 250 aa12.91□□□□□ -0.34
PCDH1-203ENST00000394536 LYZL1Q6UWQ5 148 aa12.91□□□□□ -0.34
PCDH1-203ENST00000394536 Q86TA4 180 aa12.91□□□□□ -0.34
PCDH1-203ENST00000394536 AMN1Q8IY45 258 aa12.91□□□□□ -0.34
PCDH1-203ENST00000394536 NCOR1P1Q9H4R4 102 aa12.91□□□□□ -0.34
PCDH1-203ENST00000394536 GTF2H5Q6ZYL4 71 aa12.9□□□□□ -0.34
PCDH1-203ENST00000394536 ORMDL3Q8N138 153 aa12.9□□□□□ -0.34
PCDH1-203ENST00000394536 IGLC7A0M8Q6 106 aa12.9□□□□□ -0.34
PCDH1-203ENST00000394536 K7ERU9 68 aa12.9□□□□□ -0.34
PCDH1-203ENST00000394536 IFI27P40305 119 aaPredicted RBP12.9□□□□□ -0.34
PCDH1-203ENST00000394536 TEX36Q5VZQ5 186 aa12.9□□□□□ -0.34
PCDH1-203ENST00000394536 MRPS16Q9Y3D3 137 aaKnown RBP12.9□□□□□ -0.34
PCDH1-203ENST00000394536 BOD1L1Q8NFC6 3051 aa12.9□□□□□ -0.34
PCDH1-203ENST00000394536 BUB1B-PAK6H3BSN5 160 aa12.9□□□□□ -0.34
PCDH1-203ENST00000394536 TMEM155Q4W5P6 130 aa12.9□□□□□ -0.34
PCDH1-203ENST00000394536 TMEM213A2RRL7 107 aa12.89□□□□□ -0.35
PCDH1-203ENST00000394536 ESDP10768 282 aa12.89□□□□□ -0.35
PCDH1-203ENST00000394536 GUSBP1Q15486 140 aa12.89□□□□□ -0.35
PCDH1-203ENST00000394536 PET117Q6UWS5 81 aa12.89□□□□□ -0.35
PCDH1-203ENST00000394536 LINC00322Q6ZN03 302 aaPredicted RBP12.89□□□□□ -0.35
PCDH1-203ENST00000394536 TET2Q6N021 2002 aaPredicted RBP12.89□□□□□ -0.35
PCDH1-203ENST00000394536 LOC105371242A0A075B767 164 aa12.89□□□□□ -0.35
PCDH1-203ENST00000394536 NBR2O15453 112 aa12.89□□□□□ -0.35
PCDH1-203ENST00000394536 BMI1P35226 326 aa12.89□□□□□ -0.35
PCDH1-203ENST00000394536 SPANXN1Q5VSR9 72 aa12.89□□□□□ -0.35
PCDH1-203ENST00000394536 NUP37Q8NFH4 326 aa12.89□□□□□ -0.35
PCDH1-203ENST00000394536 PPP1R14DQ9NXH3 145 aa12.89□□□□□ -0.35
PCDH1-203ENST00000394536 EVI2AP22794 236 aa12.89□□□□□ -0.35
PCDH1-203ENST00000394536 RABAC1Q9UI14 185 aa12.89□□□□□ -0.35
PCDH1-203ENST00000394536 H3BUT2 72 aa12.88□□□□□ -0.35
PCDH1-203ENST00000394536 CCL25O15444 150 aa12.88□□□□□ -0.35
PCDH1-203ENST00000394536 ORAOV1Q8WV07 137 aa12.88□□□□□ -0.35
PCDH1-203ENST00000394536 A1L4Q6 167 aa12.88□□□□□ -0.35
PCDH1-203ENST00000394536 MRPL52Q86TS9 123 aaKnown RBP12.88□□□□□ -0.35
PCDH1-203ENST00000394536 GTSF1Q8WW33 167 aa12.88□□□□□ -0.35
PCDH1-203ENST00000394536 WDFY3Q8IZQ1 3526 aa12.88□□□□□ -0.35
PCDH1-203ENST00000394536 ADAMTS20P59510 1910 aa12.87□□□□□ -0.35
PCDH1-203ENST00000394536 FER1L6-AS1Q8NA97 138 aa12.87□□□□□ -0.35
PCDH1-203ENST00000394536 PEF1Q9UBV8 284 aaKnown RBP12.87□□□□□ -0.35
PCDH1-203ENST00000394536 PRSS33Q8NF86 280 aa12.87□□□□□ -0.35
PCDH1-203ENST00000394536 MAP1LC3AQ9H492 121 aa12.87□□□□□ -0.35
PCDH1-203ENST00000394536 IGHV3OR16-10A0A075B7F0 116 aa12.87□□□□□ -0.35
PCDH1-203ENST00000394536 GOSR1O95249 250 aa12.87□□□□□ -0.35
PCDH1-203ENST00000394536 CEACAM8P31997 349 aaPredicted RBP12.87□□□□□ -0.35
PCDH1-203ENST00000394536 GAGE1Q13065 139 aa12.87□□□□□ -0.35
PCDH1-203ENST00000394536 C8orf49Q96NF6 230 aa12.87□□□□□ -0.35
PCDH1-203ENST00000394536 ZNF672Q499Z4 452 aaPredicted RBP12.86□□□□□ -0.35
PCDH1-203ENST00000394536 SAPCD1Q5SSQ6 148 aa12.86□□□□□ -0.35
PCDH1-203ENST00000394536 ZC2HC1AQ96GY0 325 aa12.86□□□□□ -0.35
PCDH1-203ENST00000394536 TMEM160Q9NX00 188 aa12.86□□□□□ -0.35
PCDH1-203ENST00000394536 TRAV30A0A087WSZ9 112 aa12.86□□□□□ -0.35
PCDH1-203ENST00000394536 IGLC1P0CG04 106 aa12.86□□□□□ -0.35
PCDH1-203ENST00000394536 IGFL2Q6UWQ7 119 aa12.86□□□□□ -0.35
PCDH1-203ENST00000394536 THAP8Q8NA92 274 aa12.86□□□□□ -0.35
PCDH1-203ENST00000394536 ARPC1AQ92747 370 aa12.86□□□□□ -0.35
PCDH1-203ENST00000394536 CHD8Q9HCK8 2581 aa12.86□□□□□ -0.35
PCDH1-203ENST00000394536 TRAV8-6A0A0B4J262 113 aa12.86□□□□□ -0.35
PCDH1-203ENST00000394536 TMEM97Q5BJF2 176 aa12.86□□□□□ -0.35
PCDH1-203ENST00000394536 CCDC144NLQ6NUI1 221 aa12.86□□□□□ -0.35
PCDH1-203ENST00000394536 C1RLQ9NZP8 487 aa12.86□□□□□ -0.35
PCDH1-203ENST00000394536 C2CD3Q4AC94 2353 aa12.85□□□□□ -0.35
PCDH1-203ENST00000394536 IGKV1D-37A0A075B6S9 117 aa12.85□□□□□ -0.35
PCDH1-203ENST00000394536 SORL1Q92673 2214 aa12.85□□□□□ -0.35
PCDH1-203ENST00000394536 PSG9Q00887 426 aa12.85□□□□□ -0.35
PCDH1-203ENST00000394536 TMEM78Q5T7P6 136 aa12.85□□□□□ -0.35
PCDH1-203ENST00000394536 COL25A1Q9BXS0 654 aaPredicted RBP12.84□□□□□ -0.35
PCDH1-203ENST00000394536 PRO3102Q9H379 93 aa12.84□□□□□ -0.35
PCDH1-203ENST00000394536 PSG3Q16557 428 aa12.84□□□□□ -0.35
PCDH1-203ENST00000394536 MYOZ3Q8TDC0 251 aa12.84□□□□□ -0.35
PCDH1-203ENST00000394536 IFI27L1Q96BM0 104 aa12.84□□□□□ -0.35
PCDH1-203ENST00000394536 HIST1H1AQ02539 215 aaPredicted RBP12.84□□□□□ -0.35
PCDH1-203ENST00000394536 PVRIGQ6DKI7 326 aa12.84□□□□□ -0.35
PCDH1-203ENST00000394536 UBTD1Q9HAC8 227 aa12.84□□□□□ -0.35
PCDH1-203ENST00000394536 LINC00527Q9UJ94 153 aa12.83□□□□□ -0.36
PCDH1-203ENST00000394536 TRBV19A0A075B6N1 114 aa12.83□□□□□ -0.36
PCDH1-203ENST00000394536 WIPF2Q8TF74 440 aaPredicted RBP12.83□□□□□ -0.36
PCDH1-203ENST00000394536 SH2D1AO60880 128 aa12.83□□□□□ -0.36
PCDH1-203ENST00000394536 MGPP08493 103 aa12.83□□□□□ -0.36
PCDH1-203ENST00000394536 FOXC2Q99958 501 aa12.83□□□□□ -0.36
PCDH1-203ENST00000394536 SHANK2-AS3Q9BTD1 123 aa12.83□□□□□ -0.36
PCDH1-203ENST00000394536 PTPN13Q12923 2485 aa12.83□□□□□ -0.36
PCDH1-203ENST00000394536 HBDP02042 147 aa12.82□□□□□ -0.36
PCDH1-203ENST00000394536 LEPP41159 167 aa12.82□□□□□ -0.36
PCDH1-203ENST00000394536 CLEC19AQ6UXS0 136 aa12.82□□□□□ -0.36
PCDH1-203ENST00000394536 RNASE8Q8TDE3 154 aaKnown RBP12.82□□□□□ -0.36
PCDH1-203ENST00000394536 F5H697 171 aa12.82□□□□□ -0.36
PCDH1-203ENST00000394536 LTAP01374 205 aa12.82□□□□□ -0.36
PCDH1-203ENST00000394536 IGLV2-23P01705 113 aa12.82□□□□□ -0.36
PCDH1-203ENST00000394536 GP9P14770 177 aa12.82□□□□□ -0.36
PCDH1-203ENST00000394536 Q6AWC8 147 aa12.82□□□□□ -0.36
PCDH1-203ENST00000394536 TNFRSF14Q92956 283 aa12.82□□□□□ -0.36
PCDH1-203ENST00000394536 C16orf92Q96LL3 132 aa12.82□□□□□ -0.36
PCDH1-203ENST00000394536 ZNF492Q9P255 531 aa12.82□□□□□ -0.36
PCDH1-203ENST00000394536 SPTBN4Q9H254 2564 aa12.82□□□□□ -0.36
PCDH1-203ENST00000394536 PRSS57Q6UWY2 283 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms