RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 NMSQ5H8A3 153 aa10.41□□□□□ -0.74
CCDC88C-204ENST00000389857 PSPNO60542 156 aa10.41□□□□□ -0.74
CCDC88C-204ENST00000389857 INAFM2P0DMQ5 153 aa10.41□□□□□ -0.74
CCDC88C-204ENST00000389857 RMI2Q96E14 147 aa10.41□□□□□ -0.74
CCDC88C-204ENST00000389857 WDR90Q96KV7 1748 aa10.41□□□□□ -0.74
CCDC88C-204ENST00000389857 LINC01619G3V211 115 aa10.41□□□□□ -0.74
CCDC88C-204ENST00000389857 IL17RELQ6ZVW7 336 aa10.41□□□□□ -0.74
CCDC88C-204ENST00000389857 MSRB2Q9Y3D2 182 aa10.41□□□□□ -0.74
CCDC88C-204ENST00000389857 THAP8Q8NA92 274 aa10.4□□□□□ -0.74
CCDC88C-204ENST00000389857 LRRK1Q38SD2 2015 aa10.4□□□□□ -0.74
CCDC88C-204ENST00000389857 SAA4P35542 130 aa10.4□□□□□ -0.74
CCDC88C-204ENST00000389857 NTF4P34130 210 aa10.4□□□□□ -0.74
CCDC88C-204ENST00000389857 APOC4P55056 127 aa10.4□□□□□ -0.74
CCDC88C-204ENST00000389857 PMVKQ15126 192 aa10.4□□□□□ -0.74
CCDC88C-204ENST00000389857 Q86TA4 180 aa10.4□□□□□ -0.74
CCDC88C-204ENST00000389857 AHCTF1Q8WYP5 2266 aa10.4□□□□□ -0.74
CCDC88C-204ENST00000389857 IGKV1-5P01602 117 aa10.4□□□□□ -0.74
CCDC88C-204ENST00000389857 ZNF362Q5T0B9 420 aaPredicted RBP10.4□□□□□ -0.74
CCDC88C-204ENST00000389857 A0A087WV48 116 aa10.4□□□□□ -0.74
CCDC88C-204ENST00000389857 I3L3M4 83 aa10.4□□□□□ -0.74
CCDC88C-204ENST00000389857 C1orf122Q6ZSJ8 110 aa10.4□□□□□ -0.74
CCDC88C-204ENST00000389857 UBE2WQ96B02 151 aa10.4□□□□□ -0.74
CCDC88C-204ENST00000389857 C9JAW5 83 aa10.4□□□□□ -0.75
CCDC88C-204ENST00000389857 F5H768 121 aa10.4□□□□□ -0.75
CCDC88C-204ENST00000389857 Q6P435 159 aa10.4□□□□□ -0.75
CCDC88C-204ENST00000389857 SCN5AQ14524 2016 aa10.4□□□□□ -0.75
CCDC88C-204ENST00000389857 SYNJ2BPP57105 145 aa10.39□□□□□ -0.75
CCDC88C-204ENST00000389857 SHANK2-AS3Q9BTD1 123 aa10.39□□□□□ -0.75
CCDC88C-204ENST00000389857 MBD3L4A6NDZ8 208 aaPredicted RBP10.39□□□□□ -0.75
CCDC88C-204ENST00000389857 MBD3L3A6NE82 208 aaPredicted RBP10.39□□□□□ -0.75
CCDC88C-204ENST00000389857 MBD3L5A6NJ08 208 aaPredicted RBP10.39□□□□□ -0.75
CCDC88C-204ENST00000389857 SMKR1H3BMG3 65 aa10.39□□□□□ -0.75
CCDC88C-204ENST00000389857 MBD3L2Q8NHZ7 208 aaPredicted RBP10.39□□□□□ -0.75
CCDC88C-204ENST00000389857 NDUFB8O95169 186 aa10.39□□□□□ -0.75
CCDC88C-204ENST00000389857 AMN1Q8IY45 258 aa10.39□□□□□ -0.75
CCDC88C-204ENST00000389857 NAA38Q9BRA0 125 aaKnown RBP10.39□□□□□ -0.75
CCDC88C-204ENST00000389857 COLCA2A8K830 154 aa10.39□□□□□ -0.75
CCDC88C-204ENST00000389857 E9PQ18 207 aa10.39□□□□□ -0.75
CCDC88C-204ENST00000389857 DEFB131AP59861 70 aa10.39□□□□□ -0.75
CCDC88C-204ENST00000389857 RPP25LQ8N5L8 163 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-204ENST00000389857 CYTL1Q9NRR1 136 aa10.38□□□□□ -0.75
CCDC88C-204ENST00000389857 UNQ6494/PRO21346Q6UXR6 183 aa10.38□□□□□ -0.75
CCDC88C-204ENST00000389857 SPANXDQ9BXN6 97 aa10.38□□□□□ -0.75
CCDC88C-204ENST00000389857 ZC2HC1BQ5TFG8 222 aa10.38□□□□□ -0.75
CCDC88C-204ENST00000389857 NEUROG3Q9Y4Z2 214 aa10.38□□□□□ -0.75
CCDC88C-204ENST00000389857 C3orf79P0CE67 100 aa10.38□□□□□ -0.75
CCDC88C-204ENST00000389857 LINC00473A8K010 186 aa10.38□□□□□ -0.75
CCDC88C-204ENST00000389857 CD5LO43866 347 aa10.38□□□□□ -0.75
CCDC88C-204ENST00000389857 RNASE2P10153 161 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-204ENST00000389857 IGFL4Q6B9Z1 124 aa10.38□□□□□ -0.75
CCDC88C-204ENST00000389857 LURAP1LQ8IV03 231 aa10.38□□□□□ -0.75
CCDC88C-204ENST00000389857 PNRC2Q9NPJ4 139 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-204ENST00000389857 SPINK8P0C7L1 97 aa10.37□□□□□ -0.75
CCDC88C-204ENST00000389857 AZU1P20160 251 aa10.37□□□□□ -0.75
CCDC88C-204ENST00000389857 MDS2Q8NDY4 140 aa10.37□□□□□ -0.75
CCDC88C-204ENST00000389857 CGB3P0DN86 165 aa10.37□□□□□ -0.75
CCDC88C-204ENST00000389857 BPESC1Q9GZL8 116 aa10.37□□□□□ -0.75
CCDC88C-204ENST00000389857 DKK1O94907 266 aa10.37□□□□□ -0.75
CCDC88C-204ENST00000389857 ARMS2P0C7Q2 107 aa10.37□□□□□ -0.75
CCDC88C-204ENST00000389857 COL8A2P25067 703 aa10.37□□□□□ -0.75
CCDC88C-204ENST00000389857 HGFACQ04756 655 aa10.37□□□□□ -0.75
CCDC88C-204ENST00000389857 CACNA1IQ9P0X4 2223 aa10.37□□□□□ -0.75
CCDC88C-204ENST00000389857 MMP23AO75900 390 aa10.37□□□□□ -0.75
CCDC88C-204ENST00000389857 Q6ZS49 121 aa10.37□□□□□ -0.75
CCDC88C-204ENST00000389857 TP53TG1Q9Y2A0 90 aa10.37□□□□□ -0.75
CCDC88C-204ENST00000389857 COX11Q9Y6N1 276 aa10.37□□□□□ -0.75
CCDC88C-204ENST00000389857 IGKV1D-17A0A075B6S4 117 aa10.37□□□□□ -0.75
CCDC88C-204ENST00000389857 OVOL3O00110 214 aa10.37□□□□□ -0.75
CCDC88C-204ENST00000389857 MSMBP08118 114 aa10.36□□□□□ -0.75
CCDC88C-204ENST00000389857 ADAMTSL5Q6ZMM2 481 aa10.36□□□□□ -0.75
CCDC88C-204ENST00000389857 TET1Q8NFU7 2136 aa10.36□□□□□ -0.75
CCDC88C-204ENST00000389857 FAM110DQ8TAY7 271 aaPredicted RBP10.36□□□□□ -0.75
CCDC88C-204ENST00000389857 C15orf62A8K5M9 175 aa10.36□□□□□ -0.75
CCDC88C-204ENST00000389857 FOXG1P55316 489 aaPredicted RBP10.36□□□□□ -0.75
CCDC88C-204ENST00000389857 DSCR8Q96T75 97 aa10.36□□□□□ -0.75
CCDC88C-204ENST00000389857 DOPEY2Q9Y3R5 2298 aa10.36□□□□□ -0.75
CCDC88C-204ENST00000389857 UBE2V1Q13404 147 aa10.36□□□□□ -0.75
CCDC88C-204ENST00000389857 MCRIP2Q9BUT9 160 aaKnown RBP10.36□□□□□ -0.75
CCDC88C-204ENST00000389857 UBL5Q9BZL1 73 aa10.36□□□□□ -0.75
CCDC88C-204ENST00000389857 PRSS46E5RG02 174 aa10.36□□□□□ -0.75
CCDC88C-204ENST00000389857 UBE2E1P51965 193 aa10.36□□□□□ -0.75
CCDC88C-204ENST00000389857 TRBV20-1A0A075B6N2 111 aa10.36□□□□□ -0.75
CCDC88C-204ENST00000389857 MPV17L2Q567V2 206 aa10.36□□□□□ -0.75
CCDC88C-204ENST00000389857 LYPD2Q6UXB3 125 aa10.36□□□□□ -0.75
CCDC88C-204ENST00000389857 GAGE12JA6NER3 117 aa10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 EFNA2O43921 213 aa10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 GAGE1Q13065 139 aa10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 GAGE4Q13068 117 aa10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 GAGE5Q13069 117 aa10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 ZNF124Q15973 351 aa10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 TMEM256Q8N2U0 113 aa10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 TMEM243Q9BU79 118 aa10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 ZNF492Q9P255 531 aa10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 DLEU1O43261 78 aa10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 INTS1Q8N201 2190 aaKnown RBP10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 Q0VFX4 171 aa10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 PRR31Q5SQ13 230 aa10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 GTSF1LQ9H1H1 148 aa10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 CACNA1DQ01668 2161 aa10.35□□□□□ -0.75
CCDC88C-204ENST00000389857 PTPRDP23468 1912 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 757.2 ms