RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 COX11Q9Y6N1 276 aa9.62□□□□□ -0.87
CLIP3-201ENST00000360535 IGKV1-17P01599 117 aa9.61□□□□□ -0.87
CLIP3-201ENST00000360535 FAM106CPP0CH98 169 aa9.61□□□□□ -0.87
CLIP3-201ENST00000360535 GRNP28799 593 aaKnown RBP9.61□□□□□ -0.87
CLIP3-201ENST00000360535 FAM106AQ4KMX7 169 aa9.61□□□□□ -0.87
CLIP3-201ENST00000360535 NGBQ9NPG2 151 aa9.61□□□□□ -0.87
CLIP3-201ENST00000360535 OTORQ9NRC9 128 aa9.61□□□□□ -0.87
CLIP3-201ENST00000360535 A0A1B0GUT8 65 aa9.61□□□□□ -0.87
CLIP3-201ENST00000360535 NCBP2LA6PVI3 153 aaKnown RBP9.61□□□□□ -0.87
CLIP3-201ENST00000360535 FA2HQ7L5A8 372 aa9.61□□□□□ -0.87
CLIP3-201ENST00000360535 BPIFA4PQ86YQ2 179 aa9.61□□□□□ -0.87
CLIP3-201ENST00000360535 MRPS16Q9Y3D3 137 aaKnown RBP9.61□□□□□ -0.87
CLIP3-201ENST00000360535 GNG7O60262 68 aa9.61□□□□□ -0.87
CLIP3-201ENST00000360535 RBX1P62877 108 aa9.61□□□□□ -0.87
CLIP3-201ENST00000360535 PSG8Q9UQ74 426 aa9.61□□□□□ -0.87
CLIP3-201ENST00000360535 OR5AL1P0C617 328 aa9.6□□□□□ -0.87
CLIP3-201ENST00000360535 SLC25A34Q6PIV7 304 aa9.6□□□□□ -0.87
CLIP3-201ENST00000360535 TMEM213A2RRL7 107 aa9.6□□□□□ -0.87
CLIP3-201ENST00000360535 HLA-DRB1P01911 266 aa9.6□□□□□ -0.87
CLIP3-201ENST00000360535 CD3EP07766 207 aa9.6□□□□□ -0.87
CLIP3-201ENST00000360535 LDLRAD2Q5SZI1 272 aa9.6□□□□□ -0.87
CLIP3-201ENST00000360535 SCNM1Q9BWG6 230 aa9.6□□□□□ -0.87
CLIP3-201ENST00000360535 TNFRSF13BO14836 293 aaPredicted RBP9.6□□□□□ -0.87
CLIP3-201ENST00000360535 IGLV2-11P01706 119 aa9.6□□□□□ -0.87
CLIP3-201ENST00000360535 UQCRFS1P47985 274 aa9.6□□□□□ -0.87
CLIP3-201ENST00000360535 AP5S1Q9NUS5 200 aa9.6□□□□□ -0.87
CLIP3-201ENST00000360535 IGKV2-40A0A087WW87 121 aaPredicted RBP9.59□□□□□ -0.87
CLIP3-201ENST00000360535 SMKR1H3BMG3 65 aa9.59□□□□□ -0.87
CLIP3-201ENST00000360535 I3L2K1 104 aa9.59□□□□□ -0.87
CLIP3-201ENST00000360535 IGKV2D-40P01614 121 aaPredicted RBP9.59□□□□□ -0.87
CLIP3-201ENST00000360535 IGLV1-47P01700 117 aa9.59□□□□□ -0.87
CLIP3-201ENST00000360535 LIPFP07098 398 aa9.59□□□□□ -0.87
CLIP3-201ENST00000360535 CT45A10P0DMU9 189 aa9.59□□□□□ -0.87
CLIP3-201ENST00000360535 IFI27P40305 119 aaPredicted RBP9.59□□□□□ -0.87
CLIP3-201ENST00000360535 FOXE3Q13461 319 aa9.59□□□□□ -0.87
CLIP3-201ENST00000360535 FAM71F2Q6NXP2 309 aa9.59□□□□□ -0.87
CLIP3-201ENST00000360535 RNF125Q96EQ8 232 aa9.59□□□□□ -0.87
CLIP3-201ENST00000360535 OR2T8A6NH00 312 aa9.59□□□□□ -0.87
CLIP3-201ENST00000360535 K7EQM0 130 aa9.59□□□□□ -0.87
CLIP3-201ENST00000360535 NCR2O95944 276 aa9.59□□□□□ -0.87
CLIP3-201ENST00000360535 APOBEC3AP31941 199 aaPredicted RBP9.59□□□□□ -0.87
CLIP3-201ENST00000360535 FBLN7Q53RD9 439 aa9.59□□□□□ -0.87
CLIP3-201ENST00000360535 MUC15Q8N387 334 aa9.59□□□□□ -0.87
CLIP3-201ENST00000360535 Q8TAT8 98 aa9.59□□□□□ -0.87
CLIP3-201ENST00000360535 ZNF492Q9P255 531 aa9.59□□□□□ -0.87
CLIP3-201ENST00000360535 TRBV19A0A075B6N1 114 aa9.58□□□□□ -0.88
CLIP3-201ENST00000360535 LOXL1Q08397 574 aaPredicted RBP9.58□□□□□ -0.88
CLIP3-201ENST00000360535 RIGQ13278 110 aa9.58□□□□□ -0.88
CLIP3-201ENST00000360535 UBE2V1Q13404 147 aa9.58□□□□□ -0.88
CLIP3-201ENST00000360535 FAM162BQ5T6X4 162 aa9.58□□□□□ -0.88
CLIP3-201ENST00000360535 ORAOV1Q8WV07 137 aa9.58□□□□□ -0.88
CLIP3-201ENST00000360535 CHCHD1Q96BP2 118 aaKnown RBP9.58□□□□□ -0.88
CLIP3-201ENST00000360535 SPTBN4Q9H254 2564 aa9.58□□□□□ -0.88
CLIP3-201ENST00000360535 IGHV3OR16-13A0A075B7E8 117 aa9.58□□□□□ -0.88
CLIP3-201ENST00000360535 IGHV3-74A0A0B4J1X5 117 aa9.58□□□□□ -0.88
CLIP3-201ENST00000360535 AMN1Q8IY45 258 aa9.58□□□□□ -0.88
CLIP3-201ENST00000360535 Q8NA96 180 aa9.58□□□□□ -0.88
CLIP3-201ENST00000360535 ZNF785A8K8V0 405 aa9.58□□□□□ -0.88
CLIP3-201ENST00000360535 K7EIM0 57 aa9.58□□□□□ -0.88
CLIP3-201ENST00000360535 CRYGBP07316 175 aa9.58□□□□□ -0.88
CLIP3-201ENST00000360535 CRIP1P50238 77 aa9.58□□□□□ -0.88
CLIP3-201ENST00000360535 NAA38Q9BRA0 125 aaKnown RBP9.58□□□□□ -0.88
CLIP3-201ENST00000360535 D6R8Y8 96 aa9.57□□□□□ -0.88
CLIP3-201ENST00000360535 LYZL1Q6UWQ5 148 aa9.57□□□□□ -0.88
CLIP3-201ENST00000360535 KAAG1Q9UBP8 84 aa9.57□□□□□ -0.88
CLIP3-201ENST00000360535 COL12A1Q99715 3063 aa9.57□□□□□ -0.88
CLIP3-201ENST00000360535 HLA-DMBP28068 263 aa9.57□□□□□ -0.88
CLIP3-201ENST00000360535 NHLH1Q02575 133 aa9.57□□□□□ -0.88
CLIP3-201ENST00000360535 ZNF491Q8N8L2 437 aa9.57□□□□□ -0.88
CLIP3-201ENST00000360535 HSPB8Q9UJY1 196 aa9.57□□□□□ -0.88
CLIP3-201ENST00000360535 IGHV3-66A0A0C4DH42 116 aa9.57□□□□□ -0.88
CLIP3-201ENST00000360535 TMEM11P17152 192 aa9.57□□□□□ -0.88
CLIP3-201ENST00000360535 PPIFP30405 207 aaKnown RBP9.57□□□□□ -0.88
CLIP3-201ENST00000360535 NEU4Q8WWR8 484 aaPredicted RBP9.57□□□□□ -0.88
CLIP3-201ENST00000360535 NDFIP1Q9BT67 221 aa9.57□□□□□ -0.88
CLIP3-201ENST00000360535 AAMDCQ9H7C9 122 aa9.57□□□□□ -0.88
CLIP3-201ENST00000360535 NPIPB5A8MRT5 1133 aa9.56□□□□□ -0.88
CLIP3-201ENST00000360535 CT83Q5H943 113 aa9.56□□□□□ -0.88
CLIP3-201ENST00000360535 SIGLEC15Q6ZMC9 328 aa9.56□□□□□ -0.88
CLIP3-201ENST00000360535 TMEM75Q8N9X5 138 aa9.56□□□□□ -0.88
CLIP3-201ENST00000360535 SHANK2-AS3Q9BTD1 123 aa9.56□□□□□ -0.88
CLIP3-201ENST00000360535 ST20Q9HBF5 79 aa9.56□□□□□ -0.88
CLIP3-201ENST00000360535 SOX21Q9Y651 276 aaPredicted RBP9.56□□□□□ -0.88
CLIP3-201ENST00000360535 HAX1O00165 279 aa9.56□□□□□ -0.88
CLIP3-201ENST00000360535 RBPJQ06330 500 aa9.56□□□□□ -0.88
CLIP3-201ENST00000360535 PSG3Q16557 428 aa9.56□□□□□ -0.88
CLIP3-201ENST00000360535 ZNF672Q499Z4 452 aaPredicted RBP9.56□□□□□ -0.88
CLIP3-201ENST00000360535 AMMECR1LQ6DCA0 310 aa9.56□□□□□ -0.88
CLIP3-201ENST00000360535 TMEM189A5PLL7 270 aa9.55□□□□□ -0.88
CLIP3-201ENST00000360535 B9A039 149 aa9.55□□□□□ -0.88
CLIP3-201ENST00000360535 FOXC1Q12948 553 aa9.55□□□□□ -0.88
CLIP3-201ENST00000360535 C8orf31Q8N9H6 132 aa9.55□□□□□ -0.88
CLIP3-201ENST00000360535 SMIM12Q96EX1 92 aa9.55□□□□□ -0.88
CLIP3-201ENST00000360535 C18orf15Q96N68 181 aa9.55□□□□□ -0.88
CLIP3-201ENST00000360535 GFRA4Q9GZZ7 299 aa9.55□□□□□ -0.88
CLIP3-201ENST00000360535 IGHV3-49A0A0A0MS15 119 aa9.55□□□□□ -0.88
CLIP3-201ENST00000360535 CSN1S1P47710 185 aa9.55□□□□□ -0.88
CLIP3-201ENST00000360535 PLP1P60201 277 aa9.55□□□□□ -0.88
CLIP3-201ENST00000360535 NBR2O15453 112 aa9.55□□□□□ -0.88
CLIP3-201ENST00000360535 TWIST1Q15672 202 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms