RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 TMEM78Q5T7P6 136 aa12.52□□□□□ -0.4
RTN3-205ENST00000356000 PATE2Q6UY27 113 aa12.52□□□□□ -0.4
RTN3-205ENST00000356000 ORMDL3Q8N138 153 aa12.52□□□□□ -0.4
RTN3-205ENST00000356000 CIARTQ8N365 385 aaPredicted RBP12.52□□□□□ -0.4
RTN3-205ENST00000356000 A8MWV9 139 aa12.52□□□□□ -0.41
RTN3-205ENST00000356000 UBE2D3P61077 147 aa12.52□□□□□ -0.41
RTN3-205ENST00000356000 UBE2D2P62837 147 aa12.52□□□□□ -0.41
RTN3-205ENST00000356000 WDR86Q86TI4 376 aa12.52□□□□□ -0.41
RTN3-205ENST00000356000 S1PR3Q99500 378 aa12.52□□□□□ -0.41
RTN3-205ENST00000356000 SPRY4Q9C004 299 aa12.52□□□□□ -0.41
RTN3-205ENST00000356000 ANKRD29Q8N6D5 301 aa12.51□□□□□ -0.41
RTN3-205ENST00000356000 DNAJC30Q96LL9 226 aa12.51□□□□□ -0.41
RTN3-205ENST00000356000 PATE3B3GLJ2 98 aa12.51□□□□□ -0.41
RTN3-205ENST00000356000 DPM2O94777 84 aa12.51□□□□□ -0.41
RTN3-205ENST00000356000 KIR2DS2P43631 304 aa12.51□□□□□ -0.41
RTN3-205ENST00000356000 ZFP2Q6ZN57 461 aa12.51□□□□□ -0.41
RTN3-205ENST00000356000 IFI27L2Q9H2X8 130 aa12.51□□□□□ -0.41
RTN3-205ENST00000356000 TCRAP04437 139 aa12.5□□□□□ -0.41
RTN3-205ENST00000356000 ATP5IP56385 69 aaPredicted RBP12.5□□□□□ -0.41
RTN3-205ENST00000356000 CD69Q07108 199 aa12.5□□□□□ -0.41
RTN3-205ENST00000356000 C2orf83Q53S99 150 aa12.5□□□□□ -0.41
RTN3-205ENST00000356000 DYSFO75923 2080 aa12.5□□□□□ -0.41
RTN3-205ENST00000356000 EP300Q09472 2414 aaPredicted RBP12.5□□□□□ -0.41
RTN3-205ENST00000356000 MYMXA0A1B0GTQ4 84 aa12.5□□□□□ -0.41
RTN3-205ENST00000356000 HES3Q5TGS1 186 aa12.5□□□□□ -0.41
RTN3-205ENST00000356000 FAM104BQ5XKR9 115 aa12.5□□□□□ -0.41
RTN3-205ENST00000356000 Q86TA4 180 aa12.5□□□□□ -0.41
RTN3-205ENST00000356000 RFESDQ8TAC1 157 aa12.5□□□□□ -0.41
RTN3-205ENST00000356000 SRSF12Q8WXF0 261 aaKnown RBP12.5□□□□□ -0.41
RTN3-205ENST00000356000 KNTC1P50748 2209 aa12.5□□□□□ -0.41
RTN3-205ENST00000356000 KNL1Q8NG31 2342 aa12.49□□□□□ -0.41
RTN3-205ENST00000356000 SPRNQ5BIV9 151 aa12.49□□□□□ -0.41
RTN3-205ENST00000356000 RBMXL3Q8N7X1 1067 aaKnown RBP12.49□□□□□ -0.41
RTN3-205ENST00000356000 RTL8AQ9BWD3 113 aa12.49□□□□□ -0.41
RTN3-205ENST00000356000 CEP250Q9BV73 2442 aa12.49□□□□□ -0.41
RTN3-205ENST00000356000 SMIM9A6NGZ8 99 aa12.49□□□□□ -0.41
RTN3-205ENST00000356000 LIFP15018 202 aa12.49□□□□□ -0.41
RTN3-205ENST00000356000 TWIST1Q15672 202 aa12.49□□□□□ -0.41
RTN3-205ENST00000356000 LYRM7Q5U5X0 104 aa12.49□□□□□ -0.41
RTN3-205ENST00000356000 OR10J6PQ8NGY7 276 aa12.49□□□□□ -0.41
RTN3-205ENST00000356000 TRIOO75962 3097 aa12.48□□□□□ -0.41
RTN3-205ENST00000356000 LOC107984156A0A0G2JMH3 177 aa12.48□□□□□ -0.41
RTN3-205ENST00000356000 ARL17AQ8IVW1 177 aa12.48□□□□□ -0.41
RTN3-205ENST00000356000 OR13A1Q8NGR1 328 aa12.48□□□□□ -0.41
RTN3-205ENST00000356000 LINC01587Q99440 93 aa12.48□□□□□ -0.41
RTN3-205ENST00000356000 PRSS1P07477 247 aa12.48□□□□□ -0.41
RTN3-205ENST00000356000 PRCDQ00LT1 54 aa12.48□□□□□ -0.41
RTN3-205ENST00000356000 LINC01559Q495D7 138 aa12.48□□□□□ -0.41
RTN3-205ENST00000356000 RPL39P5Q59GN2 51 aa12.48□□□□□ -0.41
RTN3-205ENST00000356000 FAM173AQ9BQD7 235 aa12.48□□□□□ -0.41
RTN3-205ENST00000356000 FZR1Q9UM11 496 aa12.48□□□□□ -0.41
RTN3-205ENST00000356000 LINC01549A6NIU2 74 aa12.47□□□□□ -0.41
RTN3-205ENST00000356000 ZNF785A8K8V0 405 aa12.47□□□□□ -0.41
RTN3-205ENST00000356000 TNFRSF1AP19438 455 aa12.47□□□□□ -0.41
RTN3-205ENST00000356000 ALKBH6Q3KRA9 238 aa12.47□□□□□ -0.41
RTN3-205ENST00000356000 AMN1Q8IY45 258 aa12.47□□□□□ -0.41
RTN3-205ENST00000356000 TMSB15BA0A087X1C1 80 aa12.47□□□□□ -0.41
RTN3-205ENST00000356000 LINC01546A6NGU7 62 aa12.47□□□□□ -0.41
RTN3-205ENST00000356000 ATP5LO75964 103 aa12.47□□□□□ -0.41
RTN3-205ENST00000356000 Q6ZQT7 251 aa12.47□□□□□ -0.41
RTN3-205ENST00000356000 OR1L8Q8NGR8 309 aa12.47□□□□□ -0.41
RTN3-205ENST00000356000 A0A1W2PPI3 338 aa12.46□□□□□ -0.41
RTN3-205ENST00000356000 C15orf65H3BRN8 121 aa12.46□□□□□ -0.41
RTN3-205ENST00000356000 CELA2AP08217 269 aa12.46□□□□□ -0.41
RTN3-205ENST00000356000 MRPL51Q4U2R6 128 aaKnown RBP12.46□□□□□ -0.41
RTN3-205ENST00000356000 PROK2Q9HC23 129 aa12.46□□□□□ -0.41
RTN3-205ENST00000356000 GPR179Q6PRD1 2367 aa12.46□□□□□ -0.42
RTN3-205ENST00000356000 IGLV3-12A0A075B6K2 115 aa12.46□□□□□ -0.42
RTN3-205ENST00000356000 A0A096LPE4 126 aa12.46□□□□□ -0.42
RTN3-205ENST00000356000 A0A1W2PPZ6 126 aa12.46□□□□□ -0.42
RTN3-205ENST00000356000 SPINT2O43291 252 aa12.46□□□□□ -0.42
RTN3-205ENST00000356000 NPYP01303 97 aa12.46□□□□□ -0.42
RTN3-205ENST00000356000 RNASE2P10153 161 aaKnown RBP12.46□□□□□ -0.42
RTN3-205ENST00000356000 LINC00305Q7Z4B0 112 aa12.46□□□□□ -0.42
RTN3-205ENST00000356000 FOXC2Q99958 501 aa12.46□□□□□ -0.42
RTN3-205ENST00000356000 TRAV8-2A0A0B4J237 113 aa12.45□□□□□ -0.42
RTN3-205ENST00000356000 ZNF503-AS2A6NEH8 195 aa12.45□□□□□ -0.42
RTN3-205ENST00000356000 C10orf142B7Z368 130 aa12.45□□□□□ -0.42
RTN3-205ENST00000356000 TCL1BO95988 128 aa12.45□□□□□ -0.42
RTN3-205ENST00000356000 IGHV3-9P01782 118 aa12.45□□□□□ -0.42
RTN3-205ENST00000356000 FAM90A1Q86YD7 464 aa12.45□□□□□ -0.42
RTN3-205ENST00000356000 CEACAM4O75871 244 aa12.45□□□□□ -0.42
RTN3-205ENST00000356000 PLAUP00749 431 aa12.45□□□□□ -0.42
RTN3-205ENST00000356000 UBE2D1P51668 147 aa12.45□□□□□ -0.42
RTN3-205ENST00000356000 LY6DQ14210 128 aa12.45□□□□□ -0.42
RTN3-205ENST00000356000 TRGV9Q99603 122 aa12.45□□□□□ -0.42
RTN3-205ENST00000356000 CITED2Q99967 270 aaPredicted RBP12.45□□□□□ -0.42
RTN3-205ENST00000356000 C12orf49Q9H741 205 aa12.45□□□□□ -0.42
RTN3-205ENST00000356000 TRAV40A0A0B4J280 105 aa12.44□□□□□ -0.42
RTN3-205ENST00000356000 IGLV2-11P01706 119 aa12.44□□□□□ -0.42
RTN3-205ENST00000356000 TBC1D28Q2M2D7 210 aa12.44□□□□□ -0.42
RTN3-205ENST00000356000 Q9H3A6 140 aa12.44□□□□□ -0.42
RTN3-205ENST00000356000 TMEM160Q9NX00 188 aa12.44□□□□□ -0.42
RTN3-205ENST00000356000 TRAV8-1A0A0A6YYK1 113 aa12.44□□□□□ -0.42
RTN3-205ENST00000356000 A4D1N5 150 aa12.44□□□□□ -0.42
RTN3-205ENST00000356000 B9A039 149 aa12.44□□□□□ -0.42
RTN3-205ENST00000356000 Q71RC1 249 aaPredicted RBP12.44□□□□□ -0.42
RTN3-205ENST00000356000 DEFB126Q9BYW3 111 aa12.44□□□□□ -0.42
RTN3-205ENST00000356000 CXCL13O43927 109 aa12.43□□□□□ -0.42
RTN3-205ENST00000356000 SCGB1C2P0DMR2 95 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms