RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 NBEAP1P0C6P0 100 aa14.28□□□□□ -0.12
CHMP4A-201ENST00000347519 RPL11P62913 178 aaKnown RBP14.28□□□□□ -0.12
CHMP4A-201ENST00000347519 TRBV19A0A075B6N1 114 aa14.27□□□□□ -0.12
CHMP4A-201ENST00000347519 IGFL4Q6B9Z1 124 aa14.27□□□□□ -0.12
CHMP4A-201ENST00000347519 WFDC3Q8IUB2 231 aa14.27□□□□□ -0.12
CHMP4A-201ENST00000347519 MS4A6AQ9H2W1 248 aa14.27□□□□□ -0.12
CHMP4A-201ENST00000347519 SOCS3O14543 225 aa14.26□□□□□ -0.13
CHMP4A-201ENST00000347519 HLA-DMBP28068 263 aa14.26□□□□□ -0.13
CHMP4A-201ENST00000347519 TFPI2P48307 235 aa14.26□□□□□ -0.13
CHMP4A-201ENST00000347519 UBE2G2P60604 165 aa14.26□□□□□ -0.13
CHMP4A-201ENST00000347519 RAB14P61106 215 aa14.26□□□□□ -0.13
CHMP4A-201ENST00000347519 C9orf66Q5T8R8 295 aa14.26□□□□□ -0.13
CHMP4A-201ENST00000347519 FAM24BQ8N5W8 94 aa14.26□□□□□ -0.13
CHMP4A-201ENST00000347519 TMEM167BQ9NRX6 74 aa14.26□□□□□ -0.13
CHMP4A-201ENST00000347519 YTHDF2Q9Y5A9 579 aaKnown RBP14.26□□□□□ -0.13
CHMP4A-201ENST00000347519 TRAV8-2A0A0B4J237 113 aa14.25□□□□□ -0.13
CHMP4A-201ENST00000347519 PRB4P10163 310 aaPredicted RBP14.25□□□□□ -0.13
CHMP4A-201ENST00000347519 DCANP1Q8TF63 244 aa14.25□□□□□ -0.13
CHMP4A-201ENST00000347519 NRN1Q9NPD7 142 aa14.25□□□□□ -0.13
CHMP4A-201ENST00000347519 GNG13Q9P2W3 67 aa14.25□□□□□ -0.13
CHMP4A-201ENST00000347519 TSPAN4O14817 238 aa14.24□□□□□ -0.13
CHMP4A-201ENST00000347519 PSMB3P49720 205 aa14.24□□□□□ -0.13
CHMP4A-201ENST00000347519 RBPMS2Q6ZRY4 209 aaKnown RBP14.24□□□□□ -0.13
CHMP4A-201ENST00000347519 EXOC3-AS1Q8N2X6 119 aa14.24□□□□□ -0.13
CHMP4A-201ENST00000347519 FAM74A7A6NL05 159 aa14.23□□□□□ -0.13
CHMP4A-201ENST00000347519 K7EQG2 157 aa14.23□□□□□ -0.13
CHMP4A-201ENST00000347519 PAGE4O60829 102 aa14.23□□□□□ -0.13
CHMP4A-201ENST00000347519 RANP62826 216 aaKnown RBP14.23□□□□□ -0.13
CHMP4A-201ENST00000347519 C20orf173Q96LM9 149 aa14.23□□□□□ -0.13
CHMP4A-201ENST00000347519 ZNF331Q9NQX6 463 aaPredicted RBP14.23□□□□□ -0.13
CHMP4A-201ENST00000347519 TRAV25A0A0B4J276 109 aa14.22□□□□□ -0.13
CHMP4A-201ENST00000347519 GUK1Q16774 197 aa14.22□□□□□ -0.13
CHMP4A-201ENST00000347519 HAGHQ16775 308 aa14.22□□□□□ -0.13
CHMP4A-201ENST00000347519 PRR31Q5SQ13 230 aa14.22□□□□□ -0.13
CHMP4A-201ENST00000347519 RNF182Q8N6D2 247 aa14.22□□□□□ -0.13
CHMP4A-201ENST00000347519 MCRIP2Q9BUT9 160 aaKnown RBP14.22□□□□□ -0.13
CHMP4A-201ENST00000347519 NOTCH3Q9UM47 2321 aa14.22□□□□□ -0.13
CHMP4A-201ENST00000347519 GGTLC3B5MD39 225 aa14.22□□□□□ -0.13
CHMP4A-201ENST00000347519 CD5P06127 495 aa14.22□□□□□ -0.13
CHMP4A-201ENST00000347519 ATP5G3P48201 142 aa14.22□□□□□ -0.13
CHMP4A-201ENST00000347519 PMS2P11Q13670 270 aa14.22□□□□□ -0.13
CHMP4A-201ENST00000347519 GUCA2BQ16661 112 aa14.22□□□□□ -0.13
CHMP4A-201ENST00000347519 OXLD1Q5BKU9 147 aa14.22□□□□□ -0.13
CHMP4A-201ENST00000347519 C16orf92Q96LL3 132 aa14.22□□□□□ -0.13
CHMP4A-201ENST00000347519 RARRES2Q99969 163 aa14.22□□□□□ -0.13
CHMP4A-201ENST00000347519 Q9H3A6 140 aa14.22□□□□□ -0.13
CHMP4A-201ENST00000347519 ZNF256Q9Y2P7 627 aaPredicted RBP14.22□□□□□ -0.13
CHMP4A-201ENST00000347519 DNASE2O00115 360 aaPredicted RBP14.21□□□□□ -0.14
CHMP4A-201ENST00000347519 ZNF253O75346 499 aa14.21□□□□□ -0.14
CHMP4A-201ENST00000347519 INSL3P51460 131 aa14.21□□□□□ -0.14
CHMP4A-201ENST00000347519 PDE6HQ13956 83 aa14.21□□□□□ -0.14
CHMP4A-201ENST00000347519 ICAM4Q14773 271 aa14.21□□□□□ -0.14
CHMP4A-201ENST00000347519 OR2K2Q8NGT1 345 aa14.21□□□□□ -0.14
CHMP4A-201ENST00000347519 PKD1L1Q8TDX9 2849 aa14.2□□□□□ -0.14
CHMP4A-201ENST00000347519 SORL1Q92673 2214 aa14.2□□□□□ -0.14
CHMP4A-201ENST00000347519 LOC102723971A0A1B0GUV8 181 aa14.2□□□□□ -0.14
CHMP4A-201ENST00000347519 A0A1W2PRE2 83 aa14.2□□□□□ -0.14
CHMP4A-201ENST00000347519 PGPA6NDG6 321 aa14.2□□□□□ -0.14
CHMP4A-201ENST00000347519 M0R3E3 92 aa14.2□□□□□ -0.14
CHMP4A-201ENST00000347519 MEOX2P50222 304 aa14.2□□□□□ -0.14
CHMP4A-201ENST00000347519 DEFB1P60022 68 aa14.2□□□□□ -0.14
CHMP4A-201ENST00000347519 SPAG8Q99932 426 aaPredicted RBP14.2□□□□□ -0.14
CHMP4A-201ENST00000347519 SLC50A1Q9BRV3 221 aa14.2□□□□□ -0.14
CHMP4A-201ENST00000347519 MANBALQ9NQG1 85 aa14.2□□□□□ -0.14
CHMP4A-201ENST00000347519 ZNF705FA8MVS1 300 aaPredicted RBP14.19□□□□□ -0.14
CHMP4A-201ENST00000347519 WIPF1O43516 503 aa14.19□□□□□ -0.14
CHMP4A-201ENST00000347519 ZNF688P0C7X2 276 aa14.19□□□□□ -0.14
CHMP4A-201ENST00000347519 BCL2P10415 239 aa14.19□□□□□ -0.14
CHMP4A-201ENST00000347519 PPT1P50897 306 aa14.19□□□□□ -0.14
CHMP4A-201ENST00000347519 SUMO1P63165 101 aaKnown RBP14.19□□□□□ -0.14
CHMP4A-201ENST00000347519 PAFAH1B2P68402 229 aa14.19□□□□□ -0.14
CHMP4A-201ENST00000347519 SRSF3P84103 164 aaKnown RBP14.19□□□□□ -0.14
CHMP4A-201ENST00000347519 TOR2AQ5JU69 321 aa14.19□□□□□ -0.14
CHMP4A-201ENST00000347519 CST9LP1Q5W188 147 aa14.19□□□□□ -0.14
CHMP4A-201ENST00000347519 FAM210AQ96ND0 272 aa14.19□□□□□ -0.14
CHMP4A-201ENST00000347519 OTORQ9NRC9 128 aa14.19□□□□□ -0.14
CHMP4A-201ENST00000347519 DNAH3Q8TD57 4116 aa14.18□□□□□ -0.14
CHMP4A-201ENST00000347519 TRAV2A0A0B4J234 112 aa14.18□□□□□ -0.14
CHMP4A-201ENST00000347519 RBFOX3A6NFN3 312 aa14.18□□□□□ -0.14
CHMP4A-201ENST00000347519 ISLRO14498 428 aa14.18□□□□□ -0.14
CHMP4A-201ENST00000347519 PSG9Q00887 426 aa14.18□□□□□ -0.14
CHMP4A-201ENST00000347519 BEAN1Q3B7T3 259 aa14.18□□□□□ -0.14
CHMP4A-201ENST00000347519 LCN12Q6JVE5 192 aa14.18□□□□□ -0.14
CHMP4A-201ENST00000347519 CCDC28AQ8IWP9 274 aa14.18□□□□□ -0.14
CHMP4A-201ENST00000347519 RXFP4Q8TDU9 374 aa14.18□□□□□ -0.14
CHMP4A-201ENST00000347519 LINC00052Q96N35 136 aa14.18□□□□□ -0.14
CHMP4A-201ENST00000347519 LINC00862A6NCI5 91 aa14.17□□□□□ -0.14
CHMP4A-201ENST00000347519 PRAC2D3DTV9 90 aa14.17□□□□□ -0.14
CHMP4A-201ENST00000347519 IFNA1P01562 189 aa14.17□□□□□ -0.14
CHMP4A-201ENST00000347519 CD81P60033 236 aa14.17□□□□□ -0.14
CHMP4A-201ENST00000347519 GNG5P63218 68 aa14.17□□□□□ -0.14
CHMP4A-201ENST00000347519 PSG3Q16557 428 aa14.17□□□□□ -0.14
CHMP4A-201ENST00000347519 ZNF506Q5JVG8 444 aa14.17□□□□□ -0.14
CHMP4A-201ENST00000347519 LYPD1Q8N2G4 141 aa14.17□□□□□ -0.14
CHMP4A-201ENST00000347519 ARL2-SNX15V9GYD0 113 aa14.17□□□□□ -0.14
CHMP4A-201ENST00000347519 OR4C46A6NHA9 309 aa14.16□□□□□ -0.14
CHMP4A-201ENST00000347519 C9JQL5 133 aa14.16□□□□□ -0.14
CHMP4A-201ENST00000347519 G3V4G9 280 aa14.16□□□□□ -0.14
CHMP4A-201ENST00000347519 VAX2Q9UIW0 290 aa14.16□□□□□ -0.14
CHMP4A-201ENST00000347519 C11orf94C9JXX5 98 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms