RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 C3orf79P0CE67 100 aa12.07□□□□□ -0.48
UPF3B-202ENST00000345865 CRIP1P50238 77 aa12.07□□□□□ -0.48
UPF3B-202ENST00000345865 RBPMS2Q6ZRY4 209 aaKnown RBP12.07□□□□□ -0.48
UPF3B-202ENST00000345865 TMEM75Q8N9X5 138 aa12.07□□□□□ -0.48
UPF3B-202ENST00000345865 C2orf88Q9BSF0 95 aa12.07□□□□□ -0.48
UPF3B-202ENST00000345865 GFRA4Q9GZZ7 299 aa12.07□□□□□ -0.48
UPF3B-202ENST00000345865 DIRC3C9JPN6 131 aa12.06□□□□□ -0.48
UPF3B-202ENST00000345865 APOHP02749 345 aaPredicted RBP12.06□□□□□ -0.48
UPF3B-202ENST00000345865 CTSGP08311 255 aa12.06□□□□□ -0.48
UPF3B-202ENST00000345865 LYPD1Q8N2G4 141 aa12.06□□□□□ -0.48
UPF3B-202ENST00000345865 SNHG12Q9BXW3 62 aa12.06□□□□□ -0.48
UPF3B-202ENST00000345865 PSG8Q9UQ74 426 aa12.06□□□□□ -0.48
UPF3B-202ENST00000345865 PSG3Q16557 428 aa12.06□□□□□ -0.48
UPF3B-202ENST00000345865 RNF24Q9Y225 148 aa12.06□□□□□ -0.48
UPF3B-202ENST00000345865 IGHV3OR16-8A0A075B7F1 116 aa12.05□□□□□ -0.48
UPF3B-202ENST00000345865 GNLYP22749 145 aa12.05□□□□□ -0.48
UPF3B-202ENST00000345865 UBE2E1P51965 193 aa12.05□□□□□ -0.48
UPF3B-202ENST00000345865 FOXA3P55318 350 aaPredicted RBP12.05□□□□□ -0.48
UPF3B-202ENST00000345865 C20orf144Q9BQM9 153 aa12.05□□□□□ -0.48
UPF3B-202ENST00000345865 IGHV3-35A0A0C4DH35 117 aa12.05□□□□□ -0.48
UPF3B-202ENST00000345865 SAA4P35542 130 aa12.05□□□□□ -0.48
UPF3B-202ENST00000345865 VAMP8Q9BV40 100 aa12.05□□□□□ -0.48
UPF3B-202ENST00000345865 C1RLQ9NZP8 487 aa12.05□□□□□ -0.48
UPF3B-202ENST00000345865 ABCA2Q9BZC7 2435 aa12.05□□□□□ -0.48
UPF3B-202ENST00000345865 PKD1L2Q7Z442 2459 aa12.05□□□□□ -0.48
UPF3B-202ENST00000345865 FAM231BA6NCW3 169 aa12.04□□□□□ -0.48
UPF3B-202ENST00000345865 M0QZ24 198 aa12.04□□□□□ -0.48
UPF3B-202ENST00000345865 PIP4P2Q8N4L2 257 aa12.04□□□□□ -0.48
UPF3B-202ENST00000345865 C8orf49Q96NF6 230 aa12.04□□□□□ -0.48
UPF3B-202ENST00000345865 ZFP30Q9Y2G7 519 aa12.04□□□□□ -0.48
UPF3B-202ENST00000345865 CFAP46Q8IYW2 2715 aa12.04□□□□□ -0.48
UPF3B-202ENST00000345865 LINC01548A6NM66 108 aa12.04□□□□□ -0.48
UPF3B-202ENST00000345865 FAM106CPP0CH98 169 aa12.04□□□□□ -0.48
UPF3B-202ENST00000345865 RNASEKQ6P5S7 137 aaKnown RBP12.04□□□□□ -0.48
UPF3B-202ENST00000345865 OR4B1Q8NGF8 309 aa12.04□□□□□ -0.48
UPF3B-202ENST00000345865 LPAR2Q9HBW0 351 aa12.04□□□□□ -0.48
UPF3B-202ENST00000345865 THYN1Q9P016 225 aa12.04□□□□□ -0.48
UPF3B-202ENST00000345865 SOX21Q9Y651 276 aaPredicted RBP12.04□□□□□ -0.48
UPF3B-202ENST00000345865 SH2D7A6NKC9 451 aaPredicted RBP12.03□□□□□ -0.48
UPF3B-202ENST00000345865 RNF224P0DH78 156 aa12.03□□□□□ -0.48
UPF3B-202ENST00000345865 LBHQ53QV2 105 aaPredicted RBP12.03□□□□□ -0.48
UPF3B-202ENST00000345865 SMAD5-AS1Q9Y6J3 95 aa12.03□□□□□ -0.48
UPF3B-202ENST00000345865 HSBP1O75506 76 aa12.03□□□□□ -0.48
UPF3B-202ENST00000345865 MAP1AP78559 2803 aaPredicted RBP12.03□□□□□ -0.48
UPF3B-202ENST00000345865 PDE6HQ13956 83 aa12.03□□□□□ -0.48
UPF3B-202ENST00000345865 EBLN2Q6P2I7 272 aa12.03□□□□□ -0.48
UPF3B-202ENST00000345865 ATP6V0E1O15342 81 aa12.02□□□□□ -0.49
UPF3B-202ENST00000345865 CTRLP40313 264 aa12.02□□□□□ -0.49
UPF3B-202ENST00000345865 IGFL4Q6B9Z1 124 aa12.02□□□□□ -0.49
UPF3B-202ENST00000345865 LCN12Q6JVE5 192 aa12.02□□□□□ -0.49
UPF3B-202ENST00000345865 MIEN1Q9BRT3 115 aa12.02□□□□□ -0.49
UPF3B-202ENST00000345865 TMUB1Q9BVT8 246 aa12.02□□□□□ -0.49
UPF3B-202ENST00000345865 CELSR2Q9HCU4 2923 aa12.02□□□□□ -0.49
UPF3B-202ENST00000345865 K7EQM0 130 aa12.02□□□□□ -0.49
UPF3B-202ENST00000345865 HAX1O00165 279 aa12.02□□□□□ -0.49
UPF3B-202ENST00000345865 ARMS2P0C7Q2 107 aa12.02□□□□□ -0.49
UPF3B-202ENST00000345865 RAB4AP20338 218 aa12.02□□□□□ -0.49
UPF3B-202ENST00000345865 ECSCRQ19T08 205 aa12.02□□□□□ -0.49
UPF3B-202ENST00000345865 ZNF705AQ6ZN79 300 aaPredicted RBP12.02□□□□□ -0.49
UPF3B-202ENST00000345865 M0R2Z0 102 aa12.01□□□□□ -0.49
UPF3B-202ENST00000345865 IGHG4P01861 327 aa12.01□□□□□ -0.49
UPF3B-202ENST00000345865 PMCHL1Q16048 86 aa12.01□□□□□ -0.49
UPF3B-202ENST00000345865 C15orf32Q32M92 178 aa12.01□□□□□ -0.49
UPF3B-202ENST00000345865 UNQ5815/PRO19632Q6UWF5 114 aa12.01□□□□□ -0.49
UPF3B-202ENST00000345865 BORCS7Q96B45 105 aa12.01□□□□□ -0.49
UPF3B-202ENST00000345865 IGKV2-40A0A087WW87 121 aaPredicted RBP12□□□□□ -0.49
UPF3B-202ENST00000345865 LOC102724200A0A096LPH7 203 aaPredicted RBP12□□□□□ -0.49
UPF3B-202ENST00000345865 FAM181BA6NEQ2 426 aa12□□□□□ -0.49
UPF3B-202ENST00000345865 G3V318 75 aa12□□□□□ -0.49
UPF3B-202ENST00000345865 IGKV2D-40P01614 121 aaPredicted RBP12□□□□□ -0.49
UPF3B-202ENST00000345865 SFTPCP11686 197 aa12□□□□□ -0.49
UPF3B-202ENST00000345865 HLA-DMBP28068 263 aa12□□□□□ -0.49
UPF3B-202ENST00000345865 FAM110DQ8TAY7 271 aaPredicted RBP12□□□□□ -0.49
UPF3B-202ENST00000345865 AAMDCQ9H7C9 122 aa12□□□□□ -0.49
UPF3B-202ENST00000345865 C2orf70A6NJV1 201 aa12□□□□□ -0.49
UPF3B-202ENST00000345865 GPR183P32249 361 aa12□□□□□ -0.49
UPF3B-202ENST00000345865 ZNF502Q8TBZ5 544 aa12□□□□□ -0.49
UPF3B-202ENST00000345865 CENPVL3A0A0U1RRI6 287 aa11.99□□□□□ -0.49
UPF3B-202ENST00000345865 CHEK1O14757 476 aa11.99□□□□□ -0.49
UPF3B-202ENST00000345865 IGHV4-39P01824 125 aa11.99□□□□□ -0.49
UPF3B-202ENST00000345865 MAJINQ3KP22 176 aa11.99□□□□□ -0.49
UPF3B-202ENST00000345865 SPATA12Q7Z6I5 190 aa11.99□□□□□ -0.49
UPF3B-202ENST00000345865 ATOH7Q8N100 152 aa11.99□□□□□ -0.49
UPF3B-202ENST00000345865 TMEM190Q8WZ59 177 aa11.99□□□□□ -0.49
UPF3B-202ENST00000345865 RABAC1Q9UI14 185 aa11.99□□□□□ -0.49
UPF3B-202ENST00000345865 NPFFO15130 113 aa11.99□□□□□ -0.49
UPF3B-202ENST00000345865 RPL7P18124 248 aaKnown RBP11.99□□□□□ -0.49
UPF3B-202ENST00000345865 RHOGP84095 191 aa11.99□□□□□ -0.49
UPF3B-202ENST00000345865 S100A7AQ86SG5 101 aa11.99□□□□□ -0.49
UPF3B-202ENST00000345865 TXN2Q99757 166 aa11.99□□□□□ -0.49
UPF3B-202ENST00000345865 CLEC5AQ9NY25 188 aa11.99□□□□□ -0.49
UPF3B-202ENST00000345865 PIEZO1Q92508 2521 aa11.99□□□□□ -0.49
UPF3B-202ENST00000345865 A0A1B0GUT8 65 aa11.98□□□□□ -0.49
UPF3B-202ENST00000345865 M0R143 59 aa11.98□□□□□ -0.49
UPF3B-202ENST00000345865 CLEC3BP05452 202 aa11.98□□□□□ -0.49
UPF3B-202ENST00000345865 ZNF138P52744 262 aa11.98□□□□□ -0.49
UPF3B-202ENST00000345865 SPATA45Q537H7 98 aa11.98□□□□□ -0.49
UPF3B-202ENST00000345865 NDFIP1Q9BT67 221 aa11.98□□□□□ -0.49
UPF3B-202ENST00000345865 CSMD2Q7Z408 3487 aa11.98□□□□□ -0.49
UPF3B-202ENST00000345865 IGHV3OR16-10A0A075B7F0 116 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms