RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 BPESC1Q9GZL8 116 aa15.19■□□□□ 0.02
COL9A3-201ENST00000343916 A0A1B0GXF2 115 aa15.18■□□□□ 0.02
COL9A3-201ENST00000343916 WI2-2373I1.2A0A1W2PRP0 233 aa15.18■□□□□ 0.02
COL9A3-201ENST00000343916 A8MWL6 223 aa15.18■□□□□ 0.02
COL9A3-201ENST00000343916 NDUFB8O95169 186 aa15.18■□□□□ 0.02
COL9A3-201ENST00000343916 COL8A1P27658 744 aa15.18■□□□□ 0.02
COL9A3-201ENST00000343916 MFAP4P55083 255 aa15.18■□□□□ 0.02
COL9A3-201ENST00000343916 TTC9CQ8N5M4 171 aa15.18■□□□□ 0.02
COL9A3-201ENST00000343916 ITLN2Q8WWU7 325 aaPredicted RBP15.18■□□□□ 0.02
COL9A3-201ENST00000343916 OR2T8A6NH00 312 aa15.18■□□□□ 0.02
COL9A3-201ENST00000343916 MRPS12O15235 138 aaKnown RBP15.18■□□□□ 0.02
COL9A3-201ENST00000343916 MINOS1Q5TGZ0 78 aa15.18■□□□□ 0.02
COL9A3-201ENST00000343916 C21orf62Q9NYP8 219 aa15.18■□□□□ 0.02
COL9A3-201ENST00000343916 MINOS1-NBL1R4GNA1 71 aa15.18■□□□□ 0.02
COL9A3-201ENST00000343916 IGHV7-81A0A0B4J1V7 117 aa15.17■□□□□ 0.02
COL9A3-201ENST00000343916 EGR2P11161 476 aaPredicted RBP15.17■□□□□ 0.02
COL9A3-201ENST00000343916 COL5A1-AS1Q5SY13 56 aa15.17■□□□□ 0.02
COL9A3-201ENST00000343916 ZNF492Q9P255 531 aa15.17■□□□□ 0.02
COL9A3-201ENST00000343916 ZNF785A8K8V0 405 aa15.17■□□□□ 0.02
COL9A3-201ENST00000343916 GNLYP22749 145 aa15.17■□□□□ 0.02
COL9A3-201ENST00000343916 EFNA4P52798 201 aa15.17■□□□□ 0.02
COL9A3-201ENST00000343916 EBI3Q14213 229 aa15.17■□□□□ 0.02
COL9A3-201ENST00000343916 ZNF414Q96IQ9 312 aa15.17■□□□□ 0.02
COL9A3-201ENST00000343916 TXN2Q99757 166 aa15.17■□□□□ 0.02
COL9A3-201ENST00000343916 IGHV3OR16-8A0A075B7F1 116 aa15.16■□□□□ 0.02
COL9A3-201ENST00000343916 IGHV3-35A0A0C4DH35 117 aa15.16■□□□□ 0.02
COL9A3-201ENST00000343916 IGHV2-70DA0A0C4DH43 119 aa15.16■□□□□ 0.02
COL9A3-201ENST00000343916 HBBP68871 147 aa15.16■□□□□ 0.02
COL9A3-201ENST00000343916 MAJINQ3KP22 176 aa15.16■□□□□ 0.02
COL9A3-201ENST00000343916 Q8N9W7 124 aa15.16■□□□□ 0.02
COL9A3-201ENST00000343916 OOSP1A8MZH6 123 aa15.16■□□□□ 0.02
COL9A3-201ENST00000343916 Q6ZN92 141 aa15.16■□□□□ 0.02
COL9A3-201ENST00000343916 ATP5L2Q7Z4Y8 100 aa15.16■□□□□ 0.02
COL9A3-201ENST00000343916 ZC2HC1AQ96GY0 325 aa15.16■□□□□ 0.02
COL9A3-201ENST00000343916 TRAV30A0A087WSZ9 112 aa15.15■□□□□ 0.02
COL9A3-201ENST00000343916 IGLC3P0DOY3 106 aa15.15■□□□□ 0.02
COL9A3-201ENST00000343916 DMRTA1Q5VZB9 504 aa15.15■□□□□ 0.02
COL9A3-201ENST00000343916 LCN12Q6JVE5 192 aa15.15■□□□□ 0.02
COL9A3-201ENST00000343916 AJUBAQ96IF1 538 aa15.15■□□□□ 0.02
COL9A3-201ENST00000343916 ALKBH7Q9BT30 221 aaPredicted RBP15.15■□□□□ 0.02
COL9A3-201ENST00000343916 SAA4P35542 130 aa15.15■□□□□ 0.02
COL9A3-201ENST00000343916 CT83Q5H943 113 aa15.15■□□□□ 0.02
COL9A3-201ENST00000343916 UQCR10Q9UDW1 63 aa15.15■□□□□ 0.02
COL9A3-201ENST00000343916 NPIPB6E9PJ23 425 aa15.14■□□□□ 0.01
COL9A3-201ENST00000343916 SFTPCP11686 197 aa15.14■□□□□ 0.01
COL9A3-201ENST00000343916 FOXA3P55318 350 aaPredicted RBP15.14■□□□□ 0.01
COL9A3-201ENST00000343916 STPG4Q8N801 248 aa15.14■□□□□ 0.01
COL9A3-201ENST00000343916 LMO4P61968 165 aa15.14■□□□□ 0.01
COL9A3-201ENST00000343916 BORCS7Q96B45 105 aa15.14■□□□□ 0.01
COL9A3-201ENST00000343916 SH2D7A6NKC9 451 aaPredicted RBP15.13■□□□□ 0.01
COL9A3-201ENST00000343916 FAM106CPP0CH98 169 aa15.13■□□□□ 0.01
COL9A3-201ENST00000343916 HNRNPA3P51991 378 aaKnown RBP15.13■□□□□ 0.01
COL9A3-201ENST00000343916 RBPMS2Q6ZRY4 209 aaKnown RBP15.13■□□□□ 0.01
COL9A3-201ENST00000343916 TMUB1Q9BVT8 246 aa15.13■□□□□ 0.01
COL9A3-201ENST00000343916 THYN1Q9P016 225 aa15.13■□□□□ 0.01
COL9A3-201ENST00000343916 RNF24Q9Y225 148 aa15.13■□□□□ 0.01
COL9A3-201ENST00000343916 CTSGP08311 255 aa15.12■□□□□ 0.01
COL9A3-201ENST00000343916 LINC00614P0C842 121 aa15.12■□□□□ 0.01
COL9A3-201ENST00000343916 UBE2E1P51965 193 aa15.12■□□□□ 0.01
COL9A3-201ENST00000343916 ECSCRQ19T08 205 aa15.12■□□□□ 0.01
COL9A3-201ENST00000343916 TMEM75Q8N9X5 138 aa15.12■□□□□ 0.01
COL9A3-201ENST00000343916 PSG8Q9UQ74 426 aa15.12■□□□□ 0.01
COL9A3-201ENST00000343916 PSG3Q16557 428 aa15.12■□□□□ 0.01
COL9A3-201ENST00000343916 ZNF48Q96MX3 618 aaPredicted RBP15.12■□□□□ 0.01
COL9A3-201ENST00000343916 ACACBO00763 2458 aa15.12■□□□□ 0.01
COL9A3-201ENST00000343916 RNASEKQ6P5S7 137 aaKnown RBP15.11■□□□□ 0.01
COL9A3-201ENST00000343916 LYPD1Q8N2G4 141 aa15.11■□□□□ 0.01
COL9A3-201ENST00000343916 GFRA4Q9GZZ7 299 aa15.11■□□□□ 0.01
COL9A3-201ENST00000343916 ZFP30Q9Y2G7 519 aa15.11■□□□□ 0.01
COL9A3-201ENST00000343916 M0QZ24 198 aa15.11■□□□□ 0.01
COL9A3-201ENST00000343916 TCF21O43680 179 aa15.11■□□□□ 0.01
COL9A3-201ENST00000343916 HSBP1O75506 76 aa15.11■□□□□ 0.01
COL9A3-201ENST00000343916 PIP4P2Q8N4L2 257 aa15.11■□□□□ 0.01
COL9A3-201ENST00000343916 C8orf49Q96NF6 230 aa15.11■□□□□ 0.01
COL9A3-201ENST00000343916 LAMTOR2Q9Y2Q5 125 aa15.11■□□□□ 0.01
COL9A3-201ENST00000343916 CRIP1P50238 77 aa15.1■□□□□ 0.01
COL9A3-201ENST00000343916 KLF5Q13887 457 aaPredicted RBP15.1■□□□□ 0.01
COL9A3-201ENST00000343916 K7EQM0 130 aa15.1■□□□□ 0.01
COL9A3-201ENST00000343916 ATP6V0E1O15342 81 aa15.1■□□□□ 0.01
COL9A3-201ENST00000343916 UNQ5815/PRO19632Q6UWF5 114 aa15.1■□□□□ 0.01
COL9A3-201ENST00000343916 LINC01548A6NM66 108 aa15.09■□□□□ 0.01
COL9A3-201ENST00000343916 IGFL4Q6B9Z1 124 aa15.09■□□□□ 0.01
COL9A3-201ENST00000343916 AAMDCQ9H7C9 122 aa15.09■□□□□ 0.01
COL9A3-201ENST00000343916 C1RLQ9NZP8 487 aa15.09■□□□□ 0.01
COL9A3-201ENST00000343916 C15orf32Q32M92 178 aa15.09■□□□□ 0.01
COL9A3-201ENST00000343916 Q6ZVH6 145 aa15.09■□□□□ 0.01
COL9A3-201ENST00000343916 URB1-AS1Q96HZ7 61 aa15.09■□□□□ 0.01
COL9A3-201ENST00000343916 IGHV3OR16-10A0A075B7F0 116 aa15.08■□□□□ 0.01
COL9A3-201ENST00000343916 TMEM8BA6NDV4 472 aa15.08■□□□□ 0.01
COL9A3-201ENST00000343916 OVOL3O00110 214 aa15.08■□□□□ 0.01
COL9A3-201ENST00000343916 GPR183P32249 361 aa15.08■□□□□ 0.01
COL9A3-201ENST00000343916 TRBV6-1A0A0K0K1D8 114 aa15.08■□□□□ 0
COL9A3-201ENST00000343916 G3V318 75 aa15.08■□□□□ 0
COL9A3-201ENST00000343916 M0R2Z0 102 aa15.08■□□□□ 0
COL9A3-201ENST00000343916 APOHP02749 345 aaPredicted RBP15.08■□□□□ 0
COL9A3-201ENST00000343916 HINT1P49773 126 aaPredicted RBP15.08■□□□□ 0
COL9A3-201ENST00000343916 PMCHL1Q16048 86 aa15.08■□□□□ 0
COL9A3-201ENST00000343916 C16orf54Q6UWD8 224 aa15.08■□□□□ 0
COL9A3-201ENST00000343916 PPP1R14DQ9NXH3 145 aa15.08■□□□□ 0
COL9A3-201ENST00000343916 SOX21Q9Y651 276 aaPredicted RBP15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms