RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 TRBV12-3P01733 135 aa13.07□□□□□ -0.32
DDX41-201ENST00000330503 PRB4P10163 310 aaPredicted RBP13.07□□□□□ -0.32
DDX41-201ENST00000330503 TMEM95Q3KNT9 176 aa13.07□□□□□ -0.32
DDX41-201ENST00000330503 FAM231DQ6ZW35 169 aa13.07□□□□□ -0.32
DDX41-201ENST00000330503 NUDT10Q8NFP7 164 aa13.07□□□□□ -0.32
DDX41-201ENST00000330503 OR5R1Q8NH85 324 aa13.07□□□□□ -0.32
DDX41-201ENST00000330503 TMEM190Q8WZ59 177 aa13.07□□□□□ -0.32
DDX41-201ENST00000330503 NUDT11Q96G61 164 aa13.07□□□□□ -0.32
DDX41-201ENST00000330503 USMG5Q96IX5 58 aa13.07□□□□□ -0.32
DDX41-201ENST00000330503 ZNF580Q9UK33 172 aa13.07□□□□□ -0.32
DDX41-201ENST00000330503 HELZ2Q9BYK8 2649 aaKnown RBP13.07□□□□□ -0.32
DDX41-201ENST00000330503 APOHP02749 345 aaPredicted RBP13.07□□□□□ -0.32
DDX41-201ENST00000330503 NDUFA6P56556 154 aa13.07□□□□□ -0.32
DDX41-201ENST00000330503 RELQ04864 619 aaPredicted RBP13.07□□□□□ -0.32
DDX41-201ENST00000330503 FABP9Q0Z7S8 132 aa13.07□□□□□ -0.32
DDX41-201ENST00000330503 LCNL1Q6ZST4 164 aa13.07□□□□□ -0.32
DDX41-201ENST00000330503 SMIM12Q96EX1 92 aa13.07□□□□□ -0.32
DDX41-201ENST00000330503 TRAV9-1A0A075B6T8 112 aa13.06□□□□□ -0.32
DDX41-201ENST00000330503 M0R3E3 92 aa13.06□□□□□ -0.32
DDX41-201ENST00000330503 PF4V1P10720 104 aa13.06□□□□□ -0.32
DDX41-201ENST00000330503 ACTL10Q5JWF8 245 aa13.06□□□□□ -0.32
DDX41-201ENST00000330503 LINC00322Q6ZN03 302 aaPredicted RBP13.06□□□□□ -0.32
DDX41-201ENST00000330503 Q71RC1 249 aaPredicted RBP13.06□□□□□ -0.32
DDX41-201ENST00000330503 BTF3L4Q96K17 158 aa13.06□□□□□ -0.32
DDX41-201ENST00000330503 PRDM13Q9H4Q3 707 aa13.06□□□□□ -0.32
DDX41-201ENST00000330503 U3KQE9 123 aa13.06□□□□□ -0.32
DDX41-201ENST00000330503 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.06□□□□□ -0.32
DDX41-201ENST00000330503 TRBV6-1A0A0K0K1D8 114 aa13.06□□□□□ -0.32
DDX41-201ENST00000330503 DIRC3C9JPN6 131 aa13.06□□□□□ -0.32
DDX41-201ENST00000330503 ZNF207O43670 478 aaKnown RBP13.06□□□□□ -0.32
DDX41-201ENST00000330503 S100A7P31151 101 aa13.06□□□□□ -0.32
DDX41-201ENST00000330503 Q86TA4 180 aa13.06□□□□□ -0.32
DDX41-201ENST00000330503 SERTAD4Q9NUC0 356 aa13.06□□□□□ -0.32
DDX41-201ENST00000330503 ZNF469Q96JG9 3925 aaPredicted RBP13.05□□□□□ -0.32
DDX41-201ENST00000330503 SMIM27A0A1W2PRY6 76 aa13.05□□□□□ -0.32
DDX41-201ENST00000330503 ZNF705GA8MUZ8 300 aaPredicted RBP13.05□□□□□ -0.32
DDX41-201ENST00000330503 IGHV3-11P01762 117 aa13.05□□□□□ -0.32
DDX41-201ENST00000330503 FRMD6-AS1P0C7T7 363 aa13.05□□□□□ -0.32
DDX41-201ENST00000330503 ARL3P36405 182 aa13.05□□□□□ -0.32
DDX41-201ENST00000330503 RAB9AP51151 201 aa13.05□□□□□ -0.32
DDX41-201ENST00000330503 PSG9Q00887 426 aa13.05□□□□□ -0.32
DDX41-201ENST00000330503 VPREB3Q9UKI3 123 aa13.05□□□□□ -0.32
DDX41-201ENST00000330503 PDZD2O15018 2839 aa13.05□□□□□ -0.32
DDX41-201ENST00000330503 IGHV3-66A0A0C4DH42 116 aa13.04□□□□□ -0.32
DDX41-201ENST00000330503 ZNF785A8K8V0 405 aa13.04□□□□□ -0.32
DDX41-201ENST00000330503 GATCO43716 136 aaKnown RBP13.04□□□□□ -0.32
DDX41-201ENST00000330503 CA1P00915 261 aaPredicted RBP13.04□□□□□ -0.32
DDX41-201ENST00000330503 IGHG4P01861 327 aa13.04□□□□□ -0.32
DDX41-201ENST00000330503 HOXA5P20719 270 aa13.04□□□□□ -0.32
DDX41-201ENST00000330503 PRR27Q6MZM9 219 aa13.04□□□□□ -0.32
DDX41-201ENST00000330503 PRNTQ86SH4 94 aa13.04□□□□□ -0.32
DDX41-201ENST00000330503 CREBBPQ92793 2442 aa13.04□□□□□ -0.32
DDX41-201ENST00000330503 TMEM183AQ8IXX5 376 aa13.04□□□□□ -0.32
DDX41-201ENST00000330503 TMEM75Q8N9X5 138 aa13.04□□□□□ -0.32
DDX41-201ENST00000330503 MXRA5Q9NR99 2828 aa13.04□□□□□ -0.32
DDX41-201ENST00000330503 ITPR3Q14573 2671 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 IGHV3OR16-13A0A075B7E8 117 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 IGHV3-49A0A0A0MS15 119 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 IGHV3-74A0A0B4J1X5 117 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 TCL1AP56279 114 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 IGFL4Q6B9Z1 124 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 OR4X2Q8NGF9 303 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 METTL26Q96S19 204 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 AAMDCQ9H7C9 122 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 C19orf71A6NCJ1 209 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 HOXA3O43365 443 aaPredicted RBP13.03□□□□□ -0.32
DDX41-201ENST00000330503 ZNF253O75346 499 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 AKR1D1P51857 326 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 PSG3Q16557 428 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 C1orf194Q5T5A4 169 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 GRAMD2BQ96HH9 432 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 ASCL2Q99929 193 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 PRSS22Q9GZN4 317 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 ZNF492Q9P255 531 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 PSG8Q9UQ74 426 aa13.03□□□□□ -0.32
DDX41-201ENST00000330503 A0A087X0K7 114 aa13.02□□□□□ -0.33
DDX41-201ENST00000330503 HLA-DMBP28068 263 aa13.02□□□□□ -0.33
DDX41-201ENST00000330503 C10orf99Q6UWK7 81 aa13.02□□□□□ -0.33
DDX41-201ENST00000330503 UNQ9165/PRO28630Q6UXU0 137 aa13.02□□□□□ -0.33
DDX41-201ENST00000330503 TRAPPC1Q9Y5R8 145 aa13.02□□□□□ -0.33
DDX41-201ENST00000330503 SMAD7O15105 426 aaKnown RBP13.01□□□□□ -0.33
DDX41-201ENST00000330503 PSMB8P28062 276 aa13.01□□□□□ -0.33
DDX41-201ENST00000330503 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.01□□□□□ -0.33
DDX41-201ENST00000330503 ZNF331Q9NQX6 463 aaPredicted RBP13.01□□□□□ -0.33
DDX41-201ENST00000330503 A0A0G2JLM5 398 aa13.01□□□□□ -0.33
DDX41-201ENST00000330503 IFITM10A6NMD0 228 aa13□□□□□ -0.33
DDX41-201ENST00000330503 K7EQM0 130 aa13□□□□□ -0.33
DDX41-201ENST00000330503 NDUFA4O00483 81 aa13□□□□□ -0.33
DDX41-201ENST00000330503 SPINK4O60575 86 aa13□□□□□ -0.33
DDX41-201ENST00000330503 GFI1BQ5VTD9 330 aa13□□□□□ -0.33
DDX41-201ENST00000330503 ARL6IP6Q8N6S5 226 aa13□□□□□ -0.33
DDX41-201ENST00000330503 ZNF702PQ9H963 129 aa13□□□□□ -0.33
DDX41-201ENST00000330503 ZFP30Q9Y2G7 519 aa13□□□□□ -0.33
DDX41-201ENST00000330503 CBLN1P23435 193 aa13□□□□□ -0.33
DDX41-201ENST00000330503 CSN1S1P47710 185 aa13□□□□□ -0.33
DDX41-201ENST00000330503 SLC35B1P78383 322 aa13□□□□□ -0.33
DDX41-201ENST00000330503 IL17RELQ6ZVW7 336 aa13□□□□□ -0.33
DDX41-201ENST00000330503 IZUMO1RA6ND01 250 aa12.99□□□□□ -0.33
DDX41-201ENST00000330503 ZNF705FA8MVS1 300 aaPredicted RBP12.99□□□□□ -0.33
DDX41-201ENST00000330503 CHEK1O14757 476 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms