RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 RFNGQ9Y644 331 aa11.79□□□□□ -0.52
COL7A1-201ENST00000328333 RHODO00212 210 aa11.79□□□□□ -0.52
COL7A1-201ENST00000328333 EGR2P11161 476 aaPredicted RBP11.79□□□□□ -0.52
COL7A1-201ENST00000328333 PCOLCEQ15113 449 aa11.79□□□□□ -0.52
COL7A1-201ENST00000328333 TMEM256Q8N2U0 113 aa11.79□□□□□ -0.52
COL7A1-201ENST00000328333 LOC101059948A0A1B0GTJ6 334 aa11.79□□□□□ -0.52
COL7A1-201ENST00000328333 CRYBA2P53672 197 aa11.79□□□□□ -0.52
COL7A1-201ENST00000328333 PRIMA1Q86XR5 153 aa11.79□□□□□ -0.52
COL7A1-201ENST00000328333 DEPPQ9NTK1 212 aa11.79□□□□□ -0.52
COL7A1-201ENST00000328333 VDAC2P45880 294 aaPredicted RBP11.79□□□□□ -0.52
COL7A1-201ENST00000328333 SNHG12Q9BXW3 62 aa11.79□□□□□ -0.52
COL7A1-201ENST00000328333 ZNF492Q9P255 531 aa11.79□□□□□ -0.52
COL7A1-201ENST00000328333 FAM168AQ92567 244 aa11.78□□□□□ -0.52
COL7A1-201ENST00000328333 LILRA1O75019 489 aa11.78□□□□□ -0.52
COL7A1-201ENST00000328333 IL9P15248 144 aa11.78□□□□□ -0.52
COL7A1-201ENST00000328333 SS18Q15532 418 aa11.78□□□□□ -0.52
COL7A1-201ENST00000328333 SMIM20Q8N5G0 67 aa11.78□□□□□ -0.52
COL7A1-201ENST00000328333 WFDC1Q9HC57 220 aa11.78□□□□□ -0.52
COL7A1-201ENST00000328333 NPIPB5A8MRT5 1133 aa11.78□□□□□ -0.52
COL7A1-201ENST00000328333 GAGE5Q13069 117 aa11.78□□□□□ -0.52
COL7A1-201ENST00000328333 GAGE6Q13070 117 aa11.78□□□□□ -0.52
COL7A1-201ENST00000328333 TMEM158Q8WZ71 300 aa11.78□□□□□ -0.52
COL7A1-201ENST00000328333 IMMP1LQ96LU5 166 aa11.78□□□□□ -0.52
COL7A1-201ENST00000328333 LRRK2Q5S007 2527 aa11.77□□□□□ -0.52
COL7A1-201ENST00000328333 IGKV1D-13A0A0B4J2D9 117 aa11.77□□□□□ -0.52
COL7A1-201ENST00000328333 A0A1B0GWJ7 208 aa11.77□□□□□ -0.52
COL7A1-201ENST00000328333 IGKV1-13P0DP09 117 aa11.77□□□□□ -0.52
COL7A1-201ENST00000328333 SUPT4H1P63272 117 aaKnown RBP11.77□□□□□ -0.52
COL7A1-201ENST00000328333 LYZL1Q6UWQ5 148 aa11.77□□□□□ -0.52
COL7A1-201ENST00000328333 C15orf32Q32M92 178 aa11.77□□□□□ -0.52
COL7A1-201ENST00000328333 C10orf91Q5T1B1 145 aa11.77□□□□□ -0.52
COL7A1-201ENST00000328333 CSTL1Q9H114 145 aa11.77□□□□□ -0.52
COL7A1-201ENST00000328333 IGHV3OR16-13A0A075B7E8 117 aa11.77□□□□□ -0.53
COL7A1-201ENST00000328333 IGHV3-74A0A0B4J1X5 117 aa11.77□□□□□ -0.53
COL7A1-201ENST00000328333 IGKV3D-20A0A0C4DH25 116 aa11.77□□□□□ -0.53
COL7A1-201ENST00000328333 C17orf100A8MU93 164 aa11.77□□□□□ -0.53
COL7A1-201ENST00000328333 PRO1854Q9UHT4 67 aa11.77□□□□□ -0.53
COL7A1-201ENST00000328333 AZU1P20160 251 aa11.77□□□□□ -0.53
COL7A1-201ENST00000328333 LY6EQ16553 131 aa11.77□□□□□ -0.53
COL7A1-201ENST00000328333 C6orf226Q5I0X4 101 aa11.77□□□□□ -0.53
COL7A1-201ENST00000328333 TRPT1Q86TN4 253 aaKnown RBP11.77□□□□□ -0.53
COL7A1-201ENST00000328333 POLR3KQ9Y2Y1 108 aaPredicted RBP11.77□□□□□ -0.53
COL7A1-201ENST00000328333 NOTCH4Q99466 2003 aa11.77□□□□□ -0.53
COL7A1-201ENST00000328333 CYTL1Q9NRR1 136 aa11.77□□□□□ -0.53
COL7A1-201ENST00000328333 HIVEP2P31629 2446 aa11.77□□□□□ -0.53
COL7A1-201ENST00000328333 FAM223BA6NKX1 122 aa11.77□□□□□ -0.53
COL7A1-201ENST00000328333 CD55P08174 381 aa11.77□□□□□ -0.53
COL7A1-201ENST00000328333 FAM223AQ8IWN6 122 aa11.77□□□□□ -0.53
COL7A1-201ENST00000328333 TNRC6BQ9UPQ9 1833 aaKnown RBP11.76□□□□□ -0.53
COL7A1-201ENST00000328333 NDUFB8O95169 186 aa11.76□□□□□ -0.53
COL7A1-201ENST00000328333 HGFACQ04756 655 aa11.76□□□□□ -0.53
COL7A1-201ENST00000328333 SPATA25Q9BR10 227 aa11.76□□□□□ -0.53
COL7A1-201ENST00000328333 LCN12Q6JVE5 192 aa11.76□□□□□ -0.53
COL7A1-201ENST00000328333 ZNF319Q9P2F9 582 aa11.76□□□□□ -0.53
COL7A1-201ENST00000328333 SRRM4A7MD48 611 aaKnown RBP11.76□□□□□ -0.53
COL7A1-201ENST00000328333 PMS2P5A8MQ11 134 aa11.76□□□□□ -0.53
COL7A1-201ENST00000328333 ITGBL1O95965 494 aaPredicted RBP11.76□□□□□ -0.53
COL7A1-201ENST00000328333 FOXL2P58012 376 aa11.75□□□□□ -0.53
COL7A1-201ENST00000328333 MINOS1Q5TGZ0 78 aa11.75□□□□□ -0.53
COL7A1-201ENST00000328333 R3HDMLQ9H3Y0 253 aa11.75□□□□□ -0.53
COL7A1-201ENST00000328333 MINOS1-NBL1R4GNA1 71 aa11.75□□□□□ -0.53
COL7A1-201ENST00000328333 IGHV3-49A0A0A0MS15 119 aa11.75□□□□□ -0.53
COL7A1-201ENST00000328333 WBP1Q96G27 269 aa11.75□□□□□ -0.53
COL7A1-201ENST00000328333 ZNF883P0CG24 379 aa11.75□□□□□ -0.53
COL7A1-201ENST00000328333 PSG7Q13046 419 aa11.75□□□□□ -0.53
COL7A1-201ENST00000328333 ANKRD29Q8N6D5 301 aa11.75□□□□□ -0.53
COL7A1-201ENST00000328333 PKIGQ9Y2B9 76 aa11.75□□□□□ -0.53
COL7A1-201ENST00000328333 NPC2P61916 151 aa11.75□□□□□ -0.53
COL7A1-201ENST00000328333 IGHV3-64A0A075B6Q5 118 aa11.75□□□□□ -0.53
COL7A1-201ENST00000328333 TCTEX1D4Q5JR98 221 aa11.75□□□□□ -0.53
COL7A1-201ENST00000328333 SIGLEC12Q96PQ1 595 aa11.75□□□□□ -0.53
COL7A1-201ENST00000328333 GATA2P23769 480 aaPredicted RBP11.75□□□□□ -0.53
COL7A1-201ENST00000328333 Q86TA4 180 aa11.75□□□□□ -0.53
COL7A1-201ENST00000328333 PRSS46E5RG02 174 aa11.75□□□□□ -0.53
COL7A1-201ENST00000328333 IGHV3-35A0A0C4DH35 117 aa11.74□□□□□ -0.53
COL7A1-201ENST00000328333 TSSC4Q9Y5U2 329 aaPredicted RBP11.74□□□□□ -0.53
COL7A1-201ENST00000328333 IGHV3-66A0A0C4DH42 116 aa11.74□□□□□ -0.53
COL7A1-201ENST00000328333 SLC25A16P16260 332 aa11.74□□□□□ -0.53
COL7A1-201ENST00000328333 CEND1Q8N111 149 aa11.74□□□□□ -0.53
COL7A1-201ENST00000328333 PRSS22Q9GZN4 317 aa11.74□□□□□ -0.53
COL7A1-201ENST00000328333 ATP5G1P05496 136 aa11.74□□□□□ -0.53
COL7A1-201ENST00000328333 C18orf32Q8TCD1 76 aa11.74□□□□□ -0.53
COL7A1-201ENST00000328333 SPSB2Q99619 263 aa11.74□□□□□ -0.53
COL7A1-201ENST00000328333 EREGO14944 169 aa11.74□□□□□ -0.53
COL7A1-201ENST00000328333 IGLC2P0DOY2 106 aa11.74□□□□□ -0.53
COL7A1-201ENST00000328333 IGLC3P0DOY3 106 aa11.74□□□□□ -0.53
COL7A1-201ENST00000328333 RCHY1Q96PM5 261 aa11.74□□□□□ -0.53
COL7A1-201ENST00000328333 ATOX1O00244 68 aa11.74□□□□□ -0.53
COL7A1-201ENST00000328333 FAM231DQ6ZW35 169 aa11.74□□□□□ -0.53
COL7A1-201ENST00000328333 IGHV2-26A0A0B4J1V2 119 aa11.73□□□□□ -0.53
COL7A1-201ENST00000328333 SH2D1AO60880 128 aa11.73□□□□□ -0.53
COL7A1-201ENST00000328333 SETD2Q9BYW2 2564 aaPredicted RBP11.73□□□□□ -0.53
COL7A1-201ENST00000328333 C4orf51C9J302 202 aa11.73□□□□□ -0.53
COL7A1-201ENST00000328333 INS-IGF2F8WCM5 200 aa11.73□□□□□ -0.53
COL7A1-201ENST00000328333 NRTNQ99748 197 aa11.73□□□□□ -0.53
COL7A1-201ENST00000328333 LGALS9BQ3B8N2 356 aa11.73□□□□□ -0.53
COL7A1-201ENST00000328333 LGALS9CQ6DKI2 356 aa11.73□□□□□ -0.53
COL7A1-201ENST00000328333 RPP25Q9BUL9 199 aaKnown RBP11.73□□□□□ -0.53
COL7A1-201ENST00000328333 LSM4Q9Y4Z0 139 aaKnown RBP11.73□□□□□ -0.53
COL7A1-201ENST00000328333 NCR2O95944 276 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms