RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 CYTL1Q9NRR1 136 aa6.52□□□□□ -1.37
CIITA-201ENST00000324288 C9JQL5 133 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 CD5LO43866 347 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 PPBPP02775 128 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 CFHR3Q02985 330 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 PMVKQ15126 192 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 RPRMLQ8N4K4 120 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 C9orf118A6NHY6 69 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 C15orf32Q32M92 178 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 AMN1Q8IY45 258 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 C8orf46Q8TAG6 207 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 TIMM23O14925 209 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 MLNRO43193 412 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 TMEM8BA6NDV4 472 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 H3BMM0 161 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 SH2D1AO60880 128 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 THBDP07204 575 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 TRBV20-1A0A075B6N2 111 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 B5MCH6 92 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 ZNF106Q9H2Y7 1883 aaKnown RBP6.51□□□□□ -1.37
CIITA-201ENST00000324288 A0A087WX48 190 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 A8MWP6 167 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 ADAMTS9Q9P2N4 1935 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 TMEM30BQ3MIR4 351 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 ZNF876PQ49A33 203 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 FAM57AQ8TBR7 257 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 TIMM21Q9BVV7 248 aa6.51□□□□□ -1.37
CIITA-201ENST00000324288 C17orf100A8MU93 164 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 F8WEM9 126 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 LEPROTO15243 131 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 RPUSD1Q9UJJ7 312 aaKnown RBP6.5□□□□□ -1.37
CIITA-201ENST00000324288 COL5A3P25940 1745 aaPredicted RBP6.5□□□□□ -1.37
CIITA-201ENST00000324288 LINC01551Q86U37 167 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 C1QTNF5Q9BXJ0 243 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 LINC00312Q9Y6C7 94 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 PAX8Q06710 450 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 BRD3OSQ6XYD6 125 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 RCHY1Q96PM5 261 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 FNDC1Q4ZHG4 1894 aaPredicted RBP6.5□□□□□ -1.37
CIITA-201ENST00000324288 ATG2AQ2TAZ0 1938 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 SIPA1L1O43166 1804 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 PMS2P5A8MQ11 134 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 MPZP25189 248 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.5□□□□□ -1.37
CIITA-201ENST00000324288 POLQO75417 2590 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 TRGV11A0A075B6L2 103 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 TRBV24-1A0A075B6N3 115 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 C15orf61A6NNL5 157 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 UBE2WQ96B02 151 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 AGMATQ9BSE5 352 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 TMEM133Q9H2Q1 129 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 K7EP34 96 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 SSC4DQ8WTU2 575 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 RASL10AQ92737 203 aa6.5□□□□□ -1.37
CIITA-201ENST00000324288 FCN3O75636 299 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 IFITM1P13164 125 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 ANXA2RQ3ZCQ2 193 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 NEU4Q8WWR8 484 aaPredicted RBP6.49□□□□□ -1.37
CIITA-201ENST00000324288 LINC00479Q96M42 142 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 USP24Q9UPU5 2620 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 A0A1B0GW64 132 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 SRRM4A7MD48 611 aaKnown RBP6.49□□□□□ -1.37
CIITA-201ENST00000324288 ETDBQ3ZM63 59 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 VMO1Q7Z5L0 202 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 ZNF497Q6ZNH5 498 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 PRSS22Q9GZN4 317 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 SPRR3Q9UBC9 169 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 WNT2P09544 360 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 ATP6V0BQ99437 205 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 MESP1Q9BRJ9 268 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 A0A1W2PR77 199 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 COL4A1P02462 1669 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 PINLYPA6NC86 204 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 COL24A1Q17RW2 1714 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 TINCRA0A1B0GVN0 87 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 NEGR1Q7Z3B1 354 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 MTORP42345 2549 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 IGKV1-9A0A0C4DH69 117 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 ERCC8Q13216 396 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 CFHR2P36980 270 aa6.49□□□□□ -1.37
CIITA-201ENST00000324288 SLC25A16P16260 332 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 LINC00477Q96M19 166 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 SMIM10L1P0DMW3 83 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 DEFB130BP0DP73 79 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 DEFB130AP0DP74 79 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 SMIM10Q96HG1 83 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 LOC102723996A0A087X1L8 192 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 IQCF6A8MYZ5 107 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 HOXD3P31249 432 aaPredicted RBP6.48□□□□□ -1.37
CIITA-201ENST00000324288 BVES-AS1Q5T3Y7 98 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 TEX43Q6ZNM6 134 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 MORN2Q502X0 79 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 FOXF2Q12947 444 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 CDPF1Q6NVV7 123 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 Q6ZWC4 215 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 LILRA1O75019 489 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 RPL32P62910 135 aaKnown RBP6.48□□□□□ -1.37
CIITA-201ENST00000324288 ZNF581Q9P0T4 197 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 TRBV6-7A0A0A0MS04 114 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 TRAV41A0A0B4J266 112 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms