RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TRAV10A0A0B4J240 114 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 CFC1BP0CG36 223 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 CFC1P0CG37 223 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 XCL1P47992 114 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 SPAG11AQ6PDA7 123 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 ENHOQ6UWT2 76 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 COLCA1Q6ZS62 124 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 PNRC2Q9NPJ4 139 aaKnown RBP6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 WIPF3A6NGB9 483 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 H0YIG0 161 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 UQCRQO14949 82 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 Q6Q795 121 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 MVB12AQ96EY5 273 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 FIZ1Q96SL8 496 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 MSRB2Q9Y3D2 182 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 COL24A1Q17RW2 1714 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 RGPD5Q99666 1765 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 PLA2G10O15496 165 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 CD24P25063 80 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 PYY3Q5JQD4 70 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 WI2-2373I1.2A0A1W2PRP0 233 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 CFPP27918 469 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 PFN3P60673 137 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 E9PLD3 99 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 ANGP03950 147 aaKnown RBP6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 CCL20P78556 96 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 DAZ2Q13117 558 aaKnown RBP6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 VWC2Q2TAL6 325 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 RBBP6Q7Z6E9 1792 aaKnown RBP6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 YPEL1O60688 119 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 IGKV1-39P01597 117 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 IGKV1D-39P04432 117 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 TIMP3P35625 211 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 IGFL4Q6B9Z1 124 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 POM121L12Q8N7R1 296 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 NUP35Q8NFH5 326 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 ZC2HC1AQ96GY0 325 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 ARID1BQ8NFD5 2236 aaPredicted RBP6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 TRBV5-5A0A0J9YX44 114 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 CBLN3Q6UW01 205 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 SHISA5Q8N114 240 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 MRPL53Q96EL3 112 aaKnown RBP6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 CCL19Q99731 98 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 PAPPAQ13219 1627 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 NDUFA2O43678 99 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 SPINK14Q6IE38 97 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 ITLN1Q8WWA0 313 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 FAM30AQ9NZY2 134 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 LOXHD1Q8IVV2 1947 aa6.22□□□□□ -1.41
LIMCH1-201ENST00000313860 Q5BKY6 102 aa6.21□□□□□ -1.41
LIMCH1-201ENST00000313860 Q6ZQY7 126 aa6.21□□□□□ -1.41
LIMCH1-201ENST00000313860 Q6ZS52 159 aa6.21□□□□□ -1.41
LIMCH1-201ENST00000313860 YPEL4Q96NS1 127 aa6.21□□□□□ -1.41
LIMCH1-201ENST00000313860 PLA2G2DQ9UNK4 145 aa6.21□□□□□ -1.41
LIMCH1-201ENST00000313860 LTAP01374 205 aa6.21□□□□□ -1.41
LIMCH1-201ENST00000313860 C12orf73Q69YU5 71 aa6.21□□□□□ -1.41
LIMCH1-201ENST00000313860 SPSB3Q6PJ21 355 aa6.21□□□□□ -1.41
LIMCH1-201ENST00000313860 RETNLBQ9BQ08 111 aa6.21□□□□□ -1.41
LIMCH1-201ENST00000313860 PRR20EP86478 221 aa6.21□□□□□ -1.42
LIMCH1-201ENST00000313860 PRR20CP86479 221 aa6.21□□□□□ -1.42
LIMCH1-201ENST00000313860 PRR20DP86480 221 aa6.21□□□□□ -1.42
LIMCH1-201ENST00000313860 PRR20BP86481 221 aa6.21□□□□□ -1.42
LIMCH1-201ENST00000313860 PRR20AP86496 221 aa6.21□□□□□ -1.42
LIMCH1-201ENST00000313860 Q8TAT8 98 aa6.21□□□□□ -1.42
LIMCH1-201ENST00000313860 SCN4AP35499 1836 aa6.21□□□□□ -1.42
LIMCH1-201ENST00000313860 A0A0U1RQF3 1178 aa6.21□□□□□ -1.42
LIMCH1-201ENST00000313860 YPEL2Q96QA6 119 aa6.21□□□□□ -1.42
LIMCH1-201ENST00000313860 C20orf78Q9BR46 151 aa6.21□□□□□ -1.42
LIMCH1-201ENST00000313860 IGLC7A0M8Q6 106 aa6.21□□□□□ -1.42
LIMCH1-201ENST00000313860 LMO1P25800 156 aa6.21□□□□□ -1.42
LIMCH1-201ENST00000313860 LGALS9BQ3B8N2 356 aa6.21□□□□□ -1.42
LIMCH1-201ENST00000313860 LGALS9CQ6DKI2 356 aa6.21□□□□□ -1.42
LIMCH1-201ENST00000313860 AJUBAQ96IF1 538 aa6.21□□□□□ -1.42
LIMCH1-201ENST00000313860 CLUHP3Q96NS8 147 aa6.21□□□□□ -1.42
LIMCH1-201ENST00000313860 ICOSQ9Y6W8 199 aa6.21□□□□□ -1.42
LIMCH1-201ENST00000313860 A0A1B0GTL3 188 aa6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 RMI2Q96E14 147 aa6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 ZNF73O43830 326 aaPredicted RBP6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 IGLC6P0CF74 106 aa6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 EXOC3-AS1Q8N2X6 119 aa6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 IQCF3P0C7M6 154 aa6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 YPEL3P61236 119 aaPredicted RBP6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 FOXF2Q12947 444 aa6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 Q6ZQT7 251 aa6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 GGNQ86UU5 652 aa6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 RNASE8Q8TDE3 154 aaKnown RBP6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 GTSF1Q8WW33 167 aa6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 CRYGNQ8WXF5 182 aa6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 OPRPNQ99935 248 aaPredicted RBP6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 KAAG1Q9UBP8 84 aa6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 OVOL1O14753 267 aa6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 YPEL5P62699 121 aa6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 MINOS1Q5TGZ0 78 aa6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 WFDC13Q8IUB5 93 aa6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 PPP1R3EQ9H7J1 279 aa6.2□□□□□ -1.42
LIMCH1-201ENST00000313860 CDK5RAP2Q96SN8 1893 aa6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 LINC01619G3V211 115 aa6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 PAX9P55771 341 aa6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 WFDC2Q14508 124 aa6.19□□□□□ -1.42
LIMCH1-201ENST00000313860 LINC01554Q52M75 96 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms