RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 IL5P05113 134 aa10.26□□□□□ -0.77
CCDC88B-201ENST00000301897 CXCL3P19876 107 aa10.26□□□□□ -0.77
CCDC88B-201ENST00000301897 PLP1P60201 277 aa10.26□□□□□ -0.77
CCDC88B-201ENST00000301897 OR5I1Q13606 314 aa10.26□□□□□ -0.77
CCDC88B-201ENST00000301897 SPANXN5Q5MJ07 72 aa10.26□□□□□ -0.77
CCDC88B-201ENST00000301897 TMEM182Q6ZP80 229 aaPredicted RBP10.26□□□□□ -0.77
CCDC88B-201ENST00000301897 CYP2G1PQ6ZSU1 146 aa10.26□□□□□ -0.77
CCDC88B-201ENST00000301897 CCDC28AQ8IWP9 274 aa10.26□□□□□ -0.77
CCDC88B-201ENST00000301897 SLIRPQ9GZT3 109 aaKnown RBP10.26□□□□□ -0.77
CCDC88B-201ENST00000301897 TRAV26-1A0A087WT03 109 aa10.25□□□□□ -0.77
CCDC88B-201ENST00000301897 ZNF701M0R085 212 aaPredicted RBP10.25□□□□□ -0.77
CCDC88B-201ENST00000301897 CXCL2P19875 107 aa10.25□□□□□ -0.77
CCDC88B-201ENST00000301897 VAMP1P23763 118 aa10.25□□□□□ -0.77
CCDC88B-201ENST00000301897 AP3S2P59780 193 aa10.25□□□□□ -0.77
CCDC88B-201ENST00000301897 ACOT7LQ6ZUV0 252 aa10.25□□□□□ -0.77
CCDC88B-201ENST00000301897 TMED4Q7Z7H5 227 aa10.25□□□□□ -0.77
CCDC88B-201ENST00000301897 LINC00612Q8N6U2 182 aa10.25□□□□□ -0.77
CCDC88B-201ENST00000301897 RPUSD4Q96CM3 377 aaKnown RBP10.25□□□□□ -0.77
CCDC88B-201ENST00000301897 PTTG2Q9NZH5 202 aa10.25□□□□□ -0.77
CCDC88B-201ENST00000301897 MRPS16Q9Y3D3 137 aaKnown RBP10.25□□□□□ -0.77
CCDC88B-201ENST00000301897 SMCO3A2RU48 225 aa10.24□□□□□ -0.77
CCDC88B-201ENST00000301897 RLN2P04090 185 aa10.24□□□□□ -0.77
CCDC88B-201ENST00000301897 OR5G3P0C626 314 aa10.24□□□□□ -0.77
CCDC88B-201ENST00000301897 LINC00869P0C866 280 aa10.24□□□□□ -0.77
CCDC88B-201ENST00000301897 KRTAP10-2P60368 255 aa10.24□□□□□ -0.77
CCDC88B-201ENST00000301897 KRTAP1-5Q9BYS1 174 aa10.24□□□□□ -0.77
CCDC88B-201ENST00000301897 HERC1Q15751 4861 aa10.23□□□□□ -0.77
CCDC88B-201ENST00000301897 FABP12A6NFH5 140 aa10.23□□□□□ -0.77
CCDC88B-201ENST00000301897 SNURFLB1AK76 121 aa10.23□□□□□ -0.77
CCDC88B-201ENST00000301897 EPM2AB3EWF7 344 aa10.23□□□□□ -0.77
CCDC88B-201ENST00000301897 TNFSF8P32971 234 aa10.23□□□□□ -0.77
CCDC88B-201ENST00000301897 PXDC1Q5TGL8 231 aa10.23□□□□□ -0.77
CCDC88B-201ENST00000301897 LCN15Q6UWW0 184 aa10.23□□□□□ -0.77
CCDC88B-201ENST00000301897 SLC25A21Q9BQT8 299 aaPredicted RBP10.23□□□□□ -0.77
CCDC88B-201ENST00000301897 SLC50A1Q9BRV3 221 aa10.23□□□□□ -0.77
CCDC88B-201ENST00000301897 FNDC10F2Z333 226 aa10.22□□□□□ -0.77
CCDC88B-201ENST00000301897 H3BP45 60 aa10.22□□□□□ -0.77
CCDC88B-201ENST00000301897 EREGO14944 169 aa10.22□□□□□ -0.77
CCDC88B-201ENST00000301897 ANXA7P20073 488 aaKnown RBP10.22□□□□□ -0.77
CCDC88B-201ENST00000301897 ESRGQ1W209 222 aa10.22□□□□□ -0.77
CCDC88B-201ENST00000301897 CCDC190Q86UF4 302 aa10.22□□□□□ -0.77
CCDC88B-201ENST00000301897 DEDD2Q8WXF8 326 aa10.22□□□□□ -0.77
CCDC88B-201ENST00000301897 UHRF2Q96PU4 802 aa10.22□□□□□ -0.77
CCDC88B-201ENST00000301897 RBM38Q9H0Z9 239 aaKnown RBP10.22□□□□□ -0.77
CCDC88B-201ENST00000301897 PGPEP1Q9NXJ5 209 aa10.22□□□□□ -0.77
CCDC88B-201ENST00000301897 A0A0J9YY99 117 aa10.21□□□□□ -0.77
CCDC88B-201ENST00000301897 K7EPK0 472 aa10.21□□□□□ -0.77
CCDC88B-201ENST00000301897 SFT2D2O95562 160 aa10.21□□□□□ -0.77
CCDC88B-201ENST00000301897 ZNF331Q9NQX6 463 aaPredicted RBP10.21□□□□□ -0.77
CCDC88B-201ENST00000301897 ZNF586Q9NXT0 402 aa10.21□□□□□ -0.77
CCDC88B-201ENST00000301897 GAGE12BA1L429 117 aa10.2□□□□□ -0.78
CCDC88B-201ENST00000301897 GAGE7O76087 117 aa10.2□□□□□ -0.78
CCDC88B-201ENST00000301897 HOXB5P09067 269 aa10.2□□□□□ -0.78
CCDC88B-201ENST00000301897 GAGE12FP0CL80 117 aa10.2□□□□□ -0.78
CCDC88B-201ENST00000301897 GAGE12GP0CL81 117 aa10.2□□□□□ -0.78
CCDC88B-201ENST00000301897 GAGE12IP0CL82 117 aa10.2□□□□□ -0.78
CCDC88B-201ENST00000301897 UBE2MP61081 183 aaKnown RBP10.2□□□□□ -0.78
CCDC88B-201ENST00000301897 DLK1P80370 383 aa10.2□□□□□ -0.78
CCDC88B-201ENST00000301897 ID3Q02535 119 aa10.2□□□□□ -0.78
CCDC88B-201ENST00000301897 C4orf46Q504U0 113 aa10.2□□□□□ -0.78
CCDC88B-201ENST00000301897 CDPF1Q6NVV7 123 aa10.2□□□□□ -0.78
CCDC88B-201ENST00000301897 TOMM5Q8N4H5 51 aa10.2□□□□□ -0.78
CCDC88B-201ENST00000301897 TRIM63Q969Q1 353 aa10.2□□□□□ -0.78
CCDC88B-201ENST00000301897 ARL6Q9H0F7 186 aa10.2□□□□□ -0.78
CCDC88B-201ENST00000301897 NPVFQ9HCQ7 196 aa10.2□□□□□ -0.78
CCDC88B-201ENST00000301897 PSENENQ9NZ42 101 aa10.2□□□□□ -0.78
CCDC88B-201ENST00000301897 PMS2P5A8MQ11 134 aa10.19□□□□□ -0.78
CCDC88B-201ENST00000301897 HOXA5P20719 270 aa10.19□□□□□ -0.78
CCDC88B-201ENST00000301897 DAZ2Q13117 558 aaKnown RBP10.19□□□□□ -0.78
CCDC88B-201ENST00000301897 PPP1R1AQ13522 171 aa10.19□□□□□ -0.78
CCDC88B-201ENST00000301897 TEPPQ6URK8 271 aa10.19□□□□□ -0.78
CCDC88B-201ENST00000301897 BPIFA4PQ86YQ2 179 aa10.19□□□□□ -0.78
CCDC88B-201ENST00000301897 ODF3Q96PU9 254 aa10.19□□□□□ -0.78
CCDC88B-201ENST00000301897 ARV1Q9H2C2 271 aa10.19□□□□□ -0.78
CCDC88B-201ENST00000301897 PXMP4Q9Y6I8 212 aa10.19□□□□□ -0.78
CCDC88B-201ENST00000301897 MRPS12O15235 138 aaKnown RBP10.18□□□□□ -0.78
CCDC88B-201ENST00000301897 NOL3O60936 208 aaKnown RBP10.18□□□□□ -0.78
CCDC88B-201ENST00000301897 LEPP41159 167 aa10.18□□□□□ -0.78
CCDC88B-201ENST00000301897 LINC00315P59091 139 aa10.18□□□□□ -0.78
CCDC88B-201ENST00000301897 GFI1BQ5VTD9 330 aa10.18□□□□□ -0.78
CCDC88B-201ENST00000301897 ZNF546Q86UE3 836 aa10.18□□□□□ -0.78
CCDC88B-201ENST00000301897 MCFD2Q8NI22 146 aa10.18□□□□□ -0.78
CCDC88B-201ENST00000301897 SMIM8Q96KF7 97 aa10.18□□□□□ -0.78
CCDC88B-201ENST00000301897 PYGO2Q9BRQ0 406 aa10.18□□□□□ -0.78
CCDC88B-201ENST00000301897 MGAT4CQ9UBM8 478 aa10.18□□□□□ -0.78
CCDC88B-201ENST00000301897 GOSR2O14653 212 aa10.17□□□□□ -0.78
CCDC88B-201ENST00000301897 SIVA1O15304 175 aa10.17□□□□□ -0.78
CCDC88B-201ENST00000301897 INAFM2P0DMQ5 153 aa10.17□□□□□ -0.78
CCDC88B-201ENST00000301897 ERVFC1-1P60608 527 aa10.17□□□□□ -0.78
CCDC88B-201ENST00000301897 POLR2GP62487 172 aaKnown RBP eCLIP10.17□□□□□ -0.78
CCDC88B-201ENST00000301897 PATE2Q6UY27 113 aa10.17□□□□□ -0.78
CCDC88B-201ENST00000301897 ZNF680Q8NEM1 530 aa10.17□□□□□ -0.78
CCDC88B-201ENST00000301897 OR10P1Q8NGE3 313 aa10.17□□□□□ -0.78
CCDC88B-201ENST00000301897 C18orf15Q96N68 181 aa10.17□□□□□ -0.78
CCDC88B-201ENST00000301897 TRGV2A0A075B6R0 118 aa10.16□□□□□ -0.78
CCDC88B-201ENST00000301897 RRAS2P62070 204 aaPredicted RBP10.16□□□□□ -0.78
CCDC88B-201ENST00000301897 PYDC2Q56P42 97 aa10.16□□□□□ -0.78
CCDC88B-201ENST00000301897 Q6ZRN7 208 aaPredicted RBP10.16□□□□□ -0.78
CCDC88B-201ENST00000301897 LINC00305Q7Z4B0 112 aa10.16□□□□□ -0.78
CCDC88B-201ENST00000301897 NFE4Q86UQ8 179 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms