RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 ZNF329Q86UD4 541 aa9.7□□□□□ -0.86
SHROOM3-201ENST00000296043 RCHY1Q96PM5 261 aa9.7□□□□□ -0.86
SHROOM3-201ENST00000296043 CHCHD5Q9BSY4 110 aa9.7□□□□□ -0.86
SHROOM3-201ENST00000296043 SPANXCQ9NY87 97 aa9.7□□□□□ -0.86
SHROOM3-201ENST00000296043 C22orf46C9J442 243 aa9.7□□□□□ -0.86
SHROOM3-201ENST00000296043 VGLL1Q99990 258 aa9.7□□□□□ -0.86
SHROOM3-201ENST00000296043 COL24A1Q17RW2 1714 aa9.7□□□□□ -0.86
SHROOM3-201ENST00000296043 A0A1W2PPI3 338 aa9.69□□□□□ -0.86
SHROOM3-201ENST00000296043 ASPHD1Q5U4P2 390 aa9.69□□□□□ -0.86
SHROOM3-201ENST00000296043 NTN5Q8WTR8 489 aaPredicted RBP9.69□□□□□ -0.86
SHROOM3-201ENST00000296043 PKIGQ9Y2B9 76 aa9.69□□□□□ -0.86
SHROOM3-201ENST00000296043 LINC01565O15544 149 aa9.69□□□□□ -0.86
SHROOM3-201ENST00000296043 V9GYY9 64 aa9.69□□□□□ -0.86
SHROOM3-201ENST00000296043 LINC00479Q96M42 142 aa9.69□□□□□ -0.86
SHROOM3-201ENST00000296043 UPK2O00526 184 aa9.69□□□□□ -0.86
SHROOM3-201ENST00000296043 PILRAQ9UKJ1 303 aa9.69□□□□□ -0.86
SHROOM3-201ENST00000296043 SRSF2Q01130 221 aaKnown RBP9.69□□□□□ -0.86
SHROOM3-201ENST00000296043 IGKV3D-7A0A0C4DH55 119 aa9.69□□□□□ -0.86
SHROOM3-201ENST00000296043 KNCNA6PVL3 124 aa9.69□□□□□ -0.86
SHROOM3-201ENST00000296043 LY96Q9Y6Y9 160 aa9.69□□□□□ -0.86
SHROOM3-201ENST00000296043 ZNF831Q5JPB2 1677 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 A0A087WWL8 130 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 FGFBP3Q8TAT2 258 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 RPUSD1Q9UJJ7 312 aaKnown RBP9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 RNF115Q9Y4L5 304 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 C12orf74Q32Q52 190 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 TANC1Q9C0D5 1861 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 HLA-DRB4P13762 266 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 FAM201AQ5SY85 155 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 HLA-DRB4X5D2U9 266 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 PMS2P5A8MQ11 134 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 C1orf159Q96HA4 380 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 PRO1854Q9UHT4 67 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 C2orf16Q68DN1 1984 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 C8orf86Q6ZUL3 223 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 SPTSSBQ8NFR3 76 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 TMEM213A2RRL7 107 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 IGHV3-11P01762 117 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 IGHG2P01859 326 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 IGHG3P01860 377 aa9.68□□□□□ -0.86
SHROOM3-201ENST00000296043 G3V4G9 280 aa9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 EGR2P11161 476 aaPredicted RBP9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 PRIMA1Q86XR5 153 aa9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 ARMS2P0C7Q2 107 aa9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 ERCC8Q13216 396 aa9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 TRAV12-2A0A075B6T6 113 aa9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 NBL1P41271 181 aa9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 ZNF497Q6ZNH5 498 aa9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 IGKV1D-43A0A0B4J1Z2 117 aa9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 HLA-DMBP28068 263 aa9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 CYYR1Q96J86 154 aa9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 SLC50A1Q9BRV3 221 aa9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 CRLF1O75462 422 aa9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 PFN1P07737 140 aaKnown RBP9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 MESP2Q0VG99 397 aa9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 WDR83OSQ9Y284 106 aa9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 TMEM30BQ3MIR4 351 aa9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 FAM57AQ8TBR7 257 aa9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 ADAMTSL3P82987 1691 aa9.67□□□□□ -0.86
SHROOM3-201ENST00000296043 IGLC7A0M8Q6 106 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 PDLIM4P50479 330 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 VWC2Q2TAL6 325 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 IL18BPO95998 194 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 J3QRE1 110 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 VCYO14598 125 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 WFDC2Q14508 124 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 NEGR1Q7Z3B1 354 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 TMEM54Q969K7 222 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 IGHV5-10-1A0A0J9YXX1 117 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 CCL4P13236 92 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 FOXG1P55316 489 aaPredicted RBP9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 PVRIGQ6DKI7 326 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 FAM216BQ8N7L0 139 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 LYL1P12980 280 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 IL17RELQ6ZVW7 336 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 K7EMI3 77 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 NMSQ5H8A3 153 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 C2CD4DB7Z1M9 353 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 Q86TA4 180 aa9.66□□□□□ -0.86
SHROOM3-201ENST00000296043 FOXC1Q12948 553 aa9.65□□□□□ -0.86
SHROOM3-201ENST00000296043 LYZL4Q96KX0 146 aa9.65□□□□□ -0.86
SHROOM3-201ENST00000296043 SPSB3Q6PJ21 355 aa9.65□□□□□ -0.86
SHROOM3-201ENST00000296043 NDPQ00604 133 aa9.65□□□□□ -0.86
SHROOM3-201ENST00000296043 PCP2Q8IVA1 136 aa9.65□□□□□ -0.86
SHROOM3-201ENST00000296043 TMEM167AQ8TBQ9 72 aa9.65□□□□□ -0.86
SHROOM3-201ENST00000296043 SP9P0CG40 484 aa9.65□□□□□ -0.86
SHROOM3-201ENST00000296043 C8orf46Q8TAG6 207 aa9.65□□□□□ -0.86
SHROOM3-201ENST00000296043 ZNF462Q96JM2 2506 aa9.65□□□□□ -0.86
SHROOM3-201ENST00000296043 DEFB125Q8N687 156 aa9.65□□□□□ -0.86
SHROOM3-201ENST00000296043 ZNF876PQ49A33 203 aa9.65□□□□□ -0.86
SHROOM3-201ENST00000296043 LYPD6BQ8NI32 183 aa9.65□□□□□ -0.86
SHROOM3-201ENST00000296043 TMEM92Q6UXU6 159 aa9.65□□□□□ -0.87
SHROOM3-201ENST00000296043 PAQR4Q8N4S7 273 aaPredicted RBP9.65□□□□□ -0.87
SHROOM3-201ENST00000296043 IGKV1-9A0A0C4DH69 117 aa9.65□□□□□ -0.87
SHROOM3-201ENST00000296043 CTSBP07858 339 aa9.65□□□□□ -0.87
SHROOM3-201ENST00000296043 CELA3BP08861 270 aa9.65□□□□□ -0.87
SHROOM3-201ENST00000296043 PRCDQ00LT1 54 aa9.65□□□□□ -0.87
SHROOM3-201ENST00000296043 TDRG1Q3Y452 100 aa9.65□□□□□ -0.87
SHROOM3-201ENST00000296043 ZNF501Q96CX3 271 aaPredicted RBP9.64□□□□□ -0.87
SHROOM3-201ENST00000296043 DPH3P1Q9H4G8 78 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms