RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 C14orf178Q8N769 122 aaPredicted RBP7.67□□□□□ -1.18
CUX1-201ENST00000292535 CD55P08174 381 aa7.67□□□□□ -1.18
CUX1-201ENST00000292535 ZNF876PQ49A33 203 aa7.67□□□□□ -1.18
CUX1-201ENST00000292535 C1orf159Q96HA4 380 aa7.67□□□□□ -1.18
CUX1-201ENST00000292535 PRDM6Q9NQX0 595 aa7.67□□□□□ -1.18
CUX1-201ENST00000292535 NRXN2Q9P2S2 1712 aa7.67□□□□□ -1.18
CUX1-201ENST00000292535 RPUSD1Q9UJJ7 312 aaKnown RBP7.67□□□□□ -1.18
CUX1-201ENST00000292535 THAP8Q8NA92 274 aa7.67□□□□□ -1.18
CUX1-201ENST00000292535 COX11Q9Y6N1 276 aa7.67□□□□□ -1.18
CUX1-201ENST00000292535 H3BUX3 64 aa7.67□□□□□ -1.18
CUX1-201ENST00000292535 ZNF561-AS1K7EIQ3 104 aa7.67□□□□□ -1.18
CUX1-201ENST00000292535 PLXNA4Q9HCM2 1894 aa7.66□□□□□ -1.18
CUX1-201ENST00000292535 FCN3O75636 299 aa7.66□□□□□ -1.18
CUX1-201ENST00000292535 RPL15P61313 204 aaKnown RBP7.66□□□□□ -1.18
CUX1-201ENST00000292535 DEPPQ9NTK1 212 aa7.66□□□□□ -1.18
CUX1-201ENST00000292535 PDE6HQ13956 83 aa7.66□□□□□ -1.18
CUX1-201ENST00000292535 LYZL4Q96KX0 146 aa7.66□□□□□ -1.18
CUX1-201ENST00000292535 RFNGQ9Y644 331 aa7.66□□□□□ -1.18
CUX1-201ENST00000292535 LY96Q9Y6Y9 160 aa7.66□□□□□ -1.18
CUX1-201ENST00000292535 TRBV24-1A0A075B6N3 115 aa7.66□□□□□ -1.18
CUX1-201ENST00000292535 MPZP25189 248 aa7.66□□□□□ -1.18
CUX1-201ENST00000292535 IL17RELQ6ZVW7 336 aa7.66□□□□□ -1.18
CUX1-201ENST00000292535 SOCS3O14543 225 aa7.66□□□□□ -1.18
CUX1-201ENST00000292535 TMEM200BQ69YZ2 307 aa7.66□□□□□ -1.18
CUX1-201ENST00000292535 IGHV1-18A0A0C4DH31 117 aa7.66□□□□□ -1.18
CUX1-201ENST00000292535 C1QTNF9P0C862 333 aa7.66□□□□□ -1.18
CUX1-201ENST00000292535 TRBV25-1A0A075B6N4 114 aa7.66□□□□□ -1.18
CUX1-201ENST00000292535 F5H768 121 aa7.66□□□□□ -1.18
CUX1-201ENST00000292535 CGB3P0DN86 165 aa7.65□□□□□ -1.18
CUX1-201ENST00000292535 APOC4P55056 127 aa7.65□□□□□ -1.18
CUX1-201ENST00000292535 ZNF837Q96EG3 531 aaPredicted RBP7.65□□□□□ -1.18
CUX1-201ENST00000292535 WDR83OSQ9Y284 106 aa7.65□□□□□ -1.18
CUX1-201ENST00000292535 LSM4Q9Y4Z0 139 aaKnown RBP7.65□□□□□ -1.18
CUX1-201ENST00000292535 A0A1B0GTI1 187 aa7.65□□□□□ -1.18
CUX1-201ENST00000292535 CGB7P0DN87 165 aa7.65□□□□□ -1.18
CUX1-201ENST00000292535 GUSBP1Q15486 140 aa7.65□□□□□ -1.18
CUX1-201ENST00000292535 GFRA4Q9GZZ7 299 aa7.65□□□□□ -1.18
CUX1-201ENST00000292535 TCRAP04437 139 aa7.65□□□□□ -1.18
CUX1-201ENST00000292535 TNS1Q9HBL0 1735 aaKnown RBP7.65□□□□□ -1.18
CUX1-201ENST00000292535 ESDP10768 282 aa7.65□□□□□ -1.18
CUX1-201ENST00000292535 SSBP2P81877 361 aaPredicted RBP7.65□□□□□ -1.18
CUX1-201ENST00000292535 IGKV2-40A0A087WW87 121 aaPredicted RBP7.65□□□□□ -1.18
CUX1-201ENST00000292535 IGKV2D-40P01614 121 aaPredicted RBP7.65□□□□□ -1.18
CUX1-201ENST00000292535 NPC2P61916 151 aa7.65□□□□□ -1.18
CUX1-201ENST00000292535 PRIMA1Q86XR5 153 aa7.65□□□□□ -1.18
CUX1-201ENST00000292535 MRPL27Q9P0M9 148 aaKnown RBP7.65□□□□□ -1.18
CUX1-201ENST00000292535 C11orf44Q8N8P7 122 aa7.65□□□□□ -1.19
CUX1-201ENST00000292535 CD5LO43866 347 aa7.65□□□□□ -1.19
CUX1-201ENST00000292535 TPTE2P1Q5T6R2 138 aa7.65□□□□□ -1.19
CUX1-201ENST00000292535 TREML4Q6UXN2 200 aa7.65□□□□□ -1.19
CUX1-201ENST00000292535 ADAMTS7Q9UKP4 1686 aa7.65□□□□□ -1.19
CUX1-201ENST00000292535 IGKV1D-43A0A0B4J1Z2 117 aa7.65□□□□□ -1.19
CUX1-201ENST00000292535 CD24P25063 80 aa7.65□□□□□ -1.19
CUX1-201ENST00000292535 LYZL1Q6UWQ5 148 aa7.65□□□□□ -1.19
CUX1-201ENST00000292535 RIPPLY3P57055 190 aa7.65□□□□□ -1.19
CUX1-201ENST00000292535 TRPT1Q86TN4 253 aaKnown RBP7.65□□□□□ -1.19
CUX1-201ENST00000292535 NUP35Q8NFH5 326 aa7.65□□□□□ -1.19
CUX1-201ENST00000292535 BCL6BQ8N143 479 aaPredicted RBP7.64□□□□□ -1.19
CUX1-201ENST00000292535 UBE2WQ96B02 151 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 TRAV13-2A0A0B4J235 113 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 TMEM141Q96I45 108 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 C22orf46C9J442 243 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 LY6DQ14210 128 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 ATRQ13535 2644 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 AGMATQ9BSE5 352 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 C1orf194Q5T5A4 169 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 SPATA31B1PQ5VZV4 182 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 C1QL4Q86Z23 238 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 CRIM1Q9NZV1 1036 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 DEFB130BP0DP73 79 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 DEFB130AP0DP74 79 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 TRAV13-1A0A0B4J241 112 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 FXYD7P58549 80 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 A0A0G2JMZ2 1700 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 LRRC37A2A6NM11 1700 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 IGKV1D-13A0A0B4J2D9 117 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 IGKV1-13P0DP09 117 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 DAD1P61803 113 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 TMEM105Q8N8V8 129 aa7.64□□□□□ -1.19
CUX1-201ENST00000292535 PRTN3P24158 256 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 PPIFP30405 207 aaKnown RBP7.63□□□□□ -1.19
CUX1-201ENST00000292535 EXOC3-AS1Q8N2X6 119 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 NTN3O00634 580 aaPredicted RBP7.63□□□□□ -1.19
CUX1-201ENST00000292535 WFDC12Q8WWY7 111 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 NUP210Q8TEM1 1887 aaPredicted RBP7.63□□□□□ -1.19
CUX1-201ENST00000292535 ID3Q02535 119 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 PSG3Q16557 428 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 RNF222A6NCQ9 220 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 HIST1H2BKO60814 126 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 SH2D1AO60880 128 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 HIST1H2BJP06899 126 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 HIST1H2BOP23527 126 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 HIST1H2BBP33778 126 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 HIST1H2BDP58876 126 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 HIST1H2BCP62807 126 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 HIST2H2BEQ16778 126 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.63□□□□□ -1.19
CUX1-201ENST00000292535 HIST1H2BHQ93079 126 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 HIST1H2BNQ99877 126 aa7.63□□□□□ -1.19
CUX1-201ENST00000292535 HIST1H2BMQ99879 126 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms