RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 IGHV3-23P01764 117 aa11.94□□□□□ -0.5
SF3B4-201ENST00000271628 SLC25A5P05141 298 aaKnown RBP11.94□□□□□ -0.5
SF3B4-201ENST00000271628 LY6EQ16553 131 aa11.94□□□□□ -0.5
SF3B4-201ENST00000271628 PRSS57Q6UWY2 283 aa11.94□□□□□ -0.5
SF3B4-201ENST00000271628 TEX43Q6ZNM6 134 aa11.94□□□□□ -0.5
SF3B4-201ENST00000271628 C5orf17Q8NAS9 161 aa11.94□□□□□ -0.5
SF3B4-201ENST00000271628 EEF1AKMT3Q96AZ1 226 aa11.94□□□□□ -0.5
SF3B4-201ENST00000271628 ATP6V0BQ99437 205 aa11.94□□□□□ -0.5
SF3B4-201ENST00000271628 IZUMO1RA6ND01 250 aa11.93□□□□□ -0.5
SF3B4-201ENST00000271628 IGHG2P01859 326 aa11.93□□□□□ -0.5
SF3B4-201ENST00000271628 Q5PR19 223 aa11.93□□□□□ -0.5
SF3B4-201ENST00000271628 SIGLECL1Q8N7X8 197 aa11.93□□□□□ -0.5
SF3B4-201ENST00000271628 MBD6Q96DN6 1003 aa11.93□□□□□ -0.5
SF3B4-201ENST00000271628 CHRDL1Q9BU40 450 aa11.93□□□□□ -0.5
SF3B4-201ENST00000271628 Q9H3A6 140 aa11.93□□□□□ -0.5
SF3B4-201ENST00000271628 GNB4Q9HAV0 340 aa11.93□□□□□ -0.5
SF3B4-201ENST00000271628 SERTAD4Q9NUC0 356 aa11.93□□□□□ -0.5
SF3B4-201ENST00000271628 J3QKU1 62 aa11.93□□□□□ -0.5
SF3B4-201ENST00000271628 CLEC3BP05452 202 aa11.93□□□□□ -0.5
SF3B4-201ENST00000271628 GPX1P07203 203 aa11.93□□□□□ -0.5
SF3B4-201ENST00000271628 C19orf54Q5BKX5 351 aa11.93□□□□□ -0.5
SF3B4-201ENST00000271628 TOMM20LQ6UXN7 152 aa11.93□□□□□ -0.5
SF3B4-201ENST00000271628 LYPD1Q8N2G4 141 aa11.93□□□□□ -0.5
SF3B4-201ENST00000271628 ZNF586Q9NXT0 402 aa11.93□□□□□ -0.5
SF3B4-201ENST00000271628 SOX21Q9Y651 276 aaPredicted RBP11.93□□□□□ -0.5
SF3B4-201ENST00000271628 USP9YO00507 2555 aaPredicted RBP11.93□□□□□ -0.5
SF3B4-201ENST00000271628 UBE2G1P62253 170 aa11.92□□□□□ -0.5
SF3B4-201ENST00000271628 MRPL52Q86TS9 123 aaKnown RBP11.92□□□□□ -0.5
SF3B4-201ENST00000271628 WIPF2Q8TF74 440 aaPredicted RBP11.92□□□□□ -0.5
SF3B4-201ENST00000271628 SMIM12Q96EX1 92 aa11.92□□□□□ -0.5
SF3B4-201ENST00000271628 C20orf144Q9BQM9 153 aa11.92□□□□□ -0.5
SF3B4-201ENST00000271628 ATG101Q9BSB4 218 aa11.92□□□□□ -0.5
SF3B4-201ENST00000271628 OTORQ9NRC9 128 aa11.92□□□□□ -0.5
SF3B4-201ENST00000271628 RABAC1Q9UI14 185 aa11.92□□□□□ -0.5
SF3B4-201ENST00000271628 KMT2BQ9UMN6 2715 aaPredicted RBP11.92□□□□□ -0.5
SF3B4-201ENST00000271628 TRBV19A0A075B6N1 114 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 FAM223BA6NKX1 122 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 M0R143 59 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 BMPR1BO00238 502 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 SPINK4O60575 86 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 BRI3O95415 125 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 IGHV4-31P0DP07 118 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 PLA2G2AP14555 144 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 GPR183P32249 361 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 TMEM183BQ1AE95 376 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 FAM223AQ8IWN6 122 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 ZNF331Q9NQX6 463 aaPredicted RBP11.91□□□□□ -0.5
SF3B4-201ENST00000271628 KLF12Q9Y4X4 402 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 H3BUA1 57 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 IGLC2P0DOY2 106 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 TCL1AP56279 114 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 ATP5G2Q06055 141 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 MAPK1IP1LQ8NDC0 245 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 LINC00479Q96M42 142 aa11.91□□□□□ -0.5
SF3B4-201ENST00000271628 F2Z2F3 143 aa11.9□□□□□ -0.5
SF3B4-201ENST00000271628 ZNF253O75346 499 aa11.9□□□□□ -0.5
SF3B4-201ENST00000271628 NUTF2P61970 127 aaKnown RBP11.9□□□□□ -0.5
SF3B4-201ENST00000271628 SLC35B1P78383 322 aa11.9□□□□□ -0.5
SF3B4-201ENST00000271628 PDE6HQ13956 83 aa11.9□□□□□ -0.5
SF3B4-201ENST00000271628 SNHG12Q9BXW3 62 aa11.9□□□□□ -0.5
SF3B4-201ENST00000271628 CHD6Q8TD26 2715 aa11.9□□□□□ -0.5
SF3B4-201ENST00000271628 MRPS12O15235 138 aaKnown RBP11.9□□□□□ -0.51
SF3B4-201ENST00000271628 APCSP02743 223 aa11.9□□□□□ -0.51
SF3B4-201ENST00000271628 TCRAP04437 139 aa11.9□□□□□ -0.51
SF3B4-201ENST00000271628 RPL7P18124 248 aaKnown RBP11.9□□□□□ -0.51
SF3B4-201ENST00000271628 CD33P20138 364 aa11.9□□□□□ -0.51
SF3B4-201ENST00000271628 RAB9AP51151 201 aa11.9□□□□□ -0.51
SF3B4-201ENST00000271628 MRPL54Q6P161 138 aaKnown RBP11.9□□□□□ -0.51
SF3B4-201ENST00000271628 GRAMD2BQ96HH9 432 aa11.9□□□□□ -0.51
SF3B4-201ENST00000271628 FMC1Q96HJ9 113 aa11.9□□□□□ -0.51
SF3B4-201ENST00000271628 KCNS1Q96KK3 526 aa11.9□□□□□ -0.51
SF3B4-201ENST00000271628 RAB4AP20338 218 aa11.89□□□□□ -0.51
SF3B4-201ENST00000271628 GNG5P63218 68 aa11.89□□□□□ -0.51
SF3B4-201ENST00000271628 RELQ04864 619 aaPredicted RBP11.89□□□□□ -0.51
SF3B4-201ENST00000271628 CLEC19AQ6UXS0 136 aa11.89□□□□□ -0.51
SF3B4-201ENST00000271628 CCDC140Q96MF4 163 aa11.89□□□□□ -0.51
SF3B4-201ENST00000271628 VAMP8Q9BV40 100 aa11.89□□□□□ -0.51
SF3B4-201ENST00000271628 A0A1W2PS18 150 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 H3BTX0 84 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 EREGO14944 169 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 PPIFP30405 207 aaKnown RBP11.88□□□□□ -0.51
SF3B4-201ENST00000271628 SRIP30626 198 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 DEFB112Q30KQ8 113 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 NHLRC2Q8NBF2 726 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 ZNF414Q96IQ9 312 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 Q96MF0 132 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 GPR82Q96P67 336 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 MIEN1Q9BRT3 115 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 LINC00527Q9UJ94 153 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 TENM4Q6N022 2769 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 PTPN13Q12923 2485 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 TRGV3P03979 118 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 AMTP48728 403 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 BLCAPP62952 87 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 KIAA1644Q3SXP7 199 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 C9orf139Q6ZV77 190 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 NUDT10Q8NFP7 164 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 NUDT11Q96G61 164 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 USMG5Q96IX5 58 aa11.88□□□□□ -0.51
SF3B4-201ENST00000271628 PSMG3-AS1Q96PY0 264 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 127.4 ms