RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 FABP9Q0Z7S8 132 aa17.51■□□□□ 0.39
CDX1-201ENST00000231656 TMEM95Q3KNT9 176 aa17.51■□□□□ 0.39
CDX1-201ENST00000231656 OR4F17Q8NGA8 305 aa17.51■□□□□ 0.39
CDX1-201ENST00000231656 BTF3L4Q96K17 158 aa17.51■□□□□ 0.39
CDX1-201ENST00000231656 ZNF580Q9UK33 172 aa17.51■□□□□ 0.39
CDX1-201ENST00000231656 RNF24Q9Y225 148 aa17.51■□□□□ 0.39
CDX1-201ENST00000231656 TRGC1P0CF51 173 aa17.5■□□□□ 0.39
CDX1-201ENST00000231656 NHLRC2Q8NBF2 726 aa17.5■□□□□ 0.39
CDX1-201ENST00000231656 CCDC140Q96MF4 163 aa17.5■□□□□ 0.39
CDX1-201ENST00000231656 RNASE7Q9H1E1 156 aaKnown RBP17.5■□□□□ 0.39
CDX1-201ENST00000231656 TCRAP04437 139 aa17.49■□□□□ 0.39
CDX1-201ENST00000231656 MGST1P10620 155 aaKnown RBP17.49■□□□□ 0.39
CDX1-201ENST00000231656 PPIFP30405 207 aaKnown RBP17.49■□□□□ 0.39
CDX1-201ENST00000231656 BAGE2Q86Y30 109 aa17.49■□□□□ 0.39
CDX1-201ENST00000231656 TMEM190Q8WZ59 177 aa17.49■□□□□ 0.39
CDX1-201ENST00000231656 FAM181BA6NEQ2 426 aa17.48■□□□□ 0.39
CDX1-201ENST00000231656 HILS1P60008 231 aa17.48■□□□□ 0.39
CDX1-201ENST00000231656 EEF1AKMT3Q96AZ1 226 aa17.48■□□□□ 0.39
CDX1-201ENST00000231656 C17orf77Q96MU5 243 aa17.48■□□□□ 0.39
CDX1-201ENST00000231656 MS4A10Q96PG2 267 aa17.48■□□□□ 0.39
CDX1-201ENST00000231656 RPH3ALQ9UNE2 315 aa17.48■□□□□ 0.39
CDX1-201ENST00000231656 TRAV9-1A0A075B6T8 112 aa17.48■□□□□ 0.39
CDX1-201ENST00000231656 ZNF320A2RRD8 509 aa17.48■□□□□ 0.39
CDX1-201ENST00000231656 CLEC3BP05452 202 aa17.48■□□□□ 0.39
CDX1-201ENST00000231656 S100A9P06702 114 aaKnown RBP17.48■□□□□ 0.39
CDX1-201ENST00000231656 AKR1D1P51857 326 aa17.48■□□□□ 0.39
CDX1-201ENST00000231656 UBE2G1P62253 170 aa17.48■□□□□ 0.39
CDX1-201ENST00000231656 EXOC3-AS1Q8N2X6 119 aa17.48■□□□□ 0.39
CDX1-201ENST00000231656 GAR1Q9NY12 217 aaKnown RBP17.48■□□□□ 0.39
CDX1-201ENST00000231656 NDUFA6P56556 154 aa17.47■□□□□ 0.39
CDX1-201ENST00000231656 ACTL10Q5JWF8 245 aa17.47■□□□□ 0.39
CDX1-201ENST00000231656 SIGLEC15Q6ZMC9 328 aa17.47■□□□□ 0.39
CDX1-201ENST00000231656 Q8N2B8 174 aa17.47■□□□□ 0.39
CDX1-201ENST00000231656 FMC1Q96HJ9 113 aa17.47■□□□□ 0.39
CDX1-201ENST00000231656 TRBV7-1A0A0A6YYK4 115 aa17.46■□□□□ 0.39
CDX1-201ENST00000231656 CFHR3Q02985 330 aa17.46■□□□□ 0.39
CDX1-201ENST00000231656 RPEL1Q2QD12 228 aa17.46■□□□□ 0.39
CDX1-201ENST00000231656 IBA57Q5T440 356 aaKnown RBP17.46■□□□□ 0.39
CDX1-201ENST00000231656 LYPD1Q8N2G4 141 aa17.46■□□□□ 0.39
CDX1-201ENST00000231656 SMIM12Q96EX1 92 aa17.46■□□□□ 0.39
CDX1-201ENST00000231656 ZFAND3Q9H8U3 227 aa17.46■□□□□ 0.39
CDX1-201ENST00000231656 RABAC1Q9UI14 185 aa17.46■□□□□ 0.39
CDX1-201ENST00000231656 RNASE1P07998 156 aaKnown RBP17.45■□□□□ 0.38
CDX1-201ENST00000231656 HOXA5P20719 270 aa17.45■□□□□ 0.38
CDX1-201ENST00000231656 RPL15P61313 204 aaKnown RBP17.45■□□□□ 0.38
CDX1-201ENST00000231656 TOMM20LQ6UXN7 152 aa17.45■□□□□ 0.38
CDX1-201ENST00000231656 CLEC19AQ6UXS0 136 aa17.45■□□□□ 0.38
CDX1-201ENST00000231656 FAM231DQ6ZW35 169 aa17.45■□□□□ 0.38
CDX1-201ENST00000231656 FAM223BA6NKX1 122 aa17.45■□□□□ 0.38
CDX1-201ENST00000231656 ATP5G2Q06055 141 aa17.45■□□□□ 0.38
CDX1-201ENST00000231656 FAM223AQ8IWN6 122 aa17.45■□□□□ 0.38
CDX1-201ENST00000231656 SGK494Q96LW2 274 aa17.45■□□□□ 0.38
CDX1-201ENST00000231656 GPR82Q96P67 336 aa17.45■□□□□ 0.38
CDX1-201ENST00000231656 MLST8Q9BVC4 326 aa17.45■□□□□ 0.38
CDX1-201ENST00000231656 BMPR1BO00238 502 aa17.44■□□□□ 0.38
CDX1-201ENST00000231656 CRLF1O75462 422 aa17.44■□□□□ 0.38
CDX1-201ENST00000231656 ATP6V0BQ99437 205 aa17.44■□□□□ 0.38
CDX1-201ENST00000231656 IGHV3-35A0A0C4DH35 117 aa17.43■□□□□ 0.38
CDX1-201ENST00000231656 BRI3O95415 125 aa17.43■□□□□ 0.38
CDX1-201ENST00000231656 LTAP01374 205 aa17.43■□□□□ 0.38
CDX1-201ENST00000231656 IGLV1-40P01703 118 aa17.43■□□□□ 0.38
CDX1-201ENST00000231656 PDE6HQ13956 83 aa17.43■□□□□ 0.38
CDX1-201ENST00000231656 LINC00518Q8N0U6 118 aa17.43■□□□□ 0.38
CDX1-201ENST00000231656 CMTM2Q8TAZ6 248 aa17.43■□□□□ 0.38
CDX1-201ENST00000231656 H3BUA1 57 aa17.43■□□□□ 0.38
CDX1-201ENST00000231656 JMJD8Q96S16 334 aa17.43■□□□□ 0.38
CDX1-201ENST00000231656 IGLV2-11P01706 119 aa17.42■□□□□ 0.38
CDX1-201ENST00000231656 TRGV3P03979 118 aa17.42■□□□□ 0.38
CDX1-201ENST00000231656 RPL7P18124 248 aaKnown RBP17.42■□□□□ 0.38
CDX1-201ENST00000231656 Q6ZSV7 163 aa17.42■□□□□ 0.38
CDX1-201ENST00000231656 SERTAD4Q9NUC0 356 aa17.42■□□□□ 0.38
CDX1-201ENST00000231656 MAST4O15021 2626 aa17.42■□□□□ 0.38
CDX1-201ENST00000231656 TRBV6-1A0A0K0K1D8 114 aa17.41■□□□□ 0.38
CDX1-201ENST00000231656 IGHG4P01861 327 aa17.41■□□□□ 0.38
CDX1-201ENST00000231656 GOLT1AQ6ZVE7 132 aa17.41■□□□□ 0.38
CDX1-201ENST00000231656 Q86TA4 180 aa17.41■□□□□ 0.38
CDX1-201ENST00000231656 OR8I2Q8N0Y5 310 aa17.41■□□□□ 0.38
CDX1-201ENST00000231656 GNB4Q9HAV0 340 aa17.41■□□□□ 0.38
CDX1-201ENST00000231656 IGHV3OR16-8A0A075B7F1 116 aa17.4■□□□□ 0.38
CDX1-201ENST00000231656 SMIM27A0A1W2PRY6 76 aa17.4■□□□□ 0.38
CDX1-201ENST00000231656 PF4V1P10720 104 aa17.4■□□□□ 0.38
CDX1-201ENST00000231656 S100A7P31151 101 aa17.4■□□□□ 0.38
CDX1-201ENST00000231656 NUDT10Q8NFP7 164 aa17.4■□□□□ 0.38
CDX1-201ENST00000231656 NUDT11Q96G61 164 aa17.4■□□□□ 0.38
CDX1-201ENST00000231656 KLK15Q9H2R5 256 aa17.4■□□□□ 0.38
CDX1-201ENST00000231656 CLPSL1A2RUU4 121 aa17.4■□□□□ 0.38
CDX1-201ENST00000231656 ZNF705GA8MUZ8 300 aaPredicted RBP17.4■□□□□ 0.38
CDX1-201ENST00000231656 CDX1P47902 265 aaPredicted RBP17.4■□□□□ 0.38
CDX1-201ENST00000231656 TPPP2P59282 170 aa17.4■□□□□ 0.38
CDX1-201ENST00000231656 C10orf99Q6UWK7 81 aa17.4■□□□□ 0.38
CDX1-201ENST00000231656 SMAD5-AS1Q9Y6J3 95 aa17.4■□□□□ 0.38
CDX1-201ENST00000231656 TRAV8-1A0A0A6YYK1 113 aa17.39■□□□□ 0.37
CDX1-201ENST00000231656 TRAPPC1Q9Y5R8 145 aa17.39■□□□□ 0.37
CDX1-201ENST00000231656 NIPBLQ6KC79 2804 aaeCLIP17.39■□□□□ 0.37
CDX1-201ENST00000231656 IFITM10A6NMD0 228 aa17.38■□□□□ 0.37
CDX1-201ENST00000231656 GATCO43716 136 aaKnown RBP17.38■□□□□ 0.37
CDX1-201ENST00000231656 PSMB8P28062 276 aa17.38■□□□□ 0.37
CDX1-201ENST00000231656 PRR27Q6MZM9 219 aa17.38■□□□□ 0.37
CDX1-201ENST00000231656 LCNL1Q6ZST4 164 aa17.38■□□□□ 0.37
CDX1-201ENST00000231656 TMEM75Q8N9X5 138 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms