RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 NDUFS6O75380 124 aaKnown RBP2.34□□□□□ -2.04
SCN1A-219ENST00000641575 EFEMP2O95967 443 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 P0DMU3 169 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 FAM231AP0DMU4 169 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 FAM231CP0DMU5 169 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 C16orf54Q6UWD8 224 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 LINC00477Q96M19 166 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 UBE2D4Q9Y2X8 147 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 FOXS1O43638 330 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 ZIC3O60481 467 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 NMBP08949 121 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 GAS1P54826 345 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 RPL15P61313 204 aaKnown RBP2.34□□□□□ -2.04
SCN1A-219ENST00000641575 ATP6V0E2Q8NHE4 81 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 SPSB4Q96A44 273 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 TEX37Q96LM6 180 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 CELSR2Q9HCU4 2923 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 PRSS47A8MTI9 375 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 SCARF2Q96GP6 870 aaPredicted RBP2.34□□□□□ -2.04
SCN1A-219ENST00000641575 SIGLEC7Q9Y286 467 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 HIVEP1P15822 2718 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 H0Y8X5 98 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 PRB4P10163 310 aaPredicted RBP2.33□□□□□ -2.04
SCN1A-219ENST00000641575 ZNF32P17041 273 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 AZU1P20160 251 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 GNG5P63218 68 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 SPATA46Q5T0L3 261 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 LINC01545Q5VT33 79 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 SPRED2Q7Z698 418 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 CXorf67Q86X51 503 aaPredicted RBP2.33□□□□□ -2.04
SCN1A-219ENST00000641575 TMEM243Q9BU79 118 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 MRPS18AQ9NVS2 196 aaKnown RBP2.33□□□□□ -2.04
SCN1A-219ENST00000641575 A0A1W2PRD5 423 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 A0A1W2PRF3 423 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 A0A1W2PRM7 423 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 LEPROTO15243 131 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 CD7P09564 240 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 TEX36Q5VZQ5 186 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 ORMDL3Q8N138 153 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 CARHSP1Q9Y2V2 147 aaKnown RBP2.33□□□□□ -2.04
SCN1A-219ENST00000641575 A0A1W2PPE3 182 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 OVOL1O14753 267 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 DANCRP0C864 163 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 C12orf73Q69YU5 71 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 ZNF660Q6AZW8 331 aaPredicted RBP2.33□□□□□ -2.04
SCN1A-219ENST00000641575 WDYHV1Q96HA8 205 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 B9D1Q9UPM9 204 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 HOXB4P17483 251 aaPredicted RBP2.33□□□□□ -2.04
SCN1A-219ENST00000641575 C5orf64Q2M2E5 130 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 CD300EQ496F6 205 aaPredicted RBP2.33□□□□□ -2.04
SCN1A-219ENST00000641575 TCTEX1D4Q5JR98 221 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 SPACA3Q8IXA5 215 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 TRBV20OR9-2A0A075B6H5 130 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 TRAV13-1A0A0B4J241 112 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 A0A1B0GUT8 65 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 FOXL2P58012 376 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 TEN1Q86WV5 123 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 FER1L6-AS1Q8NA97 138 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 C8orf44Q96CB5 159 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 TIMP3P35625 211 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 WDR38Q5JTN6 314 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 SAP25Q8TEE9 199 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 IDI2-AS1Q9NZ38 188 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 ZNF319Q9P2F9 582 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 IGHV3-64DA0A0J9YX35 117 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 A0A0U1RQV1 116 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 M0R1W7 72 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 CXCL10P02778 98 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 ZFP36L1Q07352 338 aaKnown RBP2.33□□□□□ -2.04
SCN1A-219ENST00000641575 FHL1Q13642 323 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 ALKAL1Q6UXT8 129 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 CRYGNQ8WXF5 182 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 NABP1Q96AH0 204 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 UBL5Q9BZL1 73 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 K7EP34 96 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 SERF1AO75920 110 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 ZFPL1O95159 310 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 MRPL23Q16540 153 aaKnown RBP2.33□□□□□ -2.04
SCN1A-219ENST00000641575 SRSF12Q8WXF0 261 aaKnown RBP2.33□□□□□ -2.04
SCN1A-219ENST00000641575 CHCHD1Q96BP2 118 aaKnown RBP2.33□□□□□ -2.04
SCN1A-219ENST00000641575 ZC2HC1AQ96GY0 325 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 B9D2Q9BPU9 175 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 TBC1D29Q9UFV1 150 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 FZR1Q9UM11 496 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 FOXA2Q9Y261 457 aaPredicted RBP2.33□□□□□ -2.04
SCN1A-219ENST00000641575 SHANK3Q9BYB0 1731 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 A0A1W2PNR3 127 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 FABP5P3A8MUU1 101 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 A8MXK9 166 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 MSMBP08118 114 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 ORMDL2Q53FV1 153 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 UTF1Q5T230 341 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 IL36BQ9NZH7 164 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 IGHV1-45A0A0A0MS14 117 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 A0A1W2PQF6 199 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 PLA2G5P39877 138 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 AMN1Q8IY45 258 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 FMC1Q96HJ9 113 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 KLHDC2Q9Y2U9 406 aa2.33□□□□□ -2.04
SCN1A-219ENST00000641575 PRSS21Q9Y6M0 314 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms