RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 PCTPQ9UKL6 214 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 ASB4Q9Y574 426 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 PKHD1L1Q86WI1 4243 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 VWFP04275 2813 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 MAP1BP46821 2468 aaKnown RBP-0.22□□□□□ -2.44
VPS35-212ENST00000640313 ARHGEF28Q8N1W1 1705 aaKnown RBP-0.22□□□□□ -2.44
VPS35-212ENST00000640313 ZGRF1Q86YA3 2104 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 KIAA1109Q2LD37 5005 aa-0.22□□□□□ -2.45
VPS35-212ENST00000640313 NEBP20929 6669 aa-0.22□□□□□ -2.45
VPS35-212ENST00000640313 TNS3Q68CZ2 1445 aa-0.22□□□□□ -2.45
VPS35-212ENST00000640313 MIA2Q96PC5 1412 aa-0.22□□□□□ -2.45
VPS35-212ENST00000640313 SBF1O95248 1867 aa-0.22□□□□□ -2.45
VPS35-212ENST00000640313 CCDC88AQ3V6T2 1871 aa-0.22□□□□□ -2.45
VPS35-212ENST00000640313 SCN10AQ9Y5Y9 1956 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 CHD3Q12873 2000 aaKnown RBP-0.23□□□□□ -2.45
VPS35-212ENST00000640313 RIMBP3CA6NJZ7 1639 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 RIMBP3BA6NNM3 1639 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 HECW1Q76N89 1606 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 RIMBP3Q9UFD9 1639 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 ATRQ13535 2644 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 TRAV23DV6A0A075B6W5 121 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 A0A096LNT2 108 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 A0A0J9YY99 117 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 hADV38S2A0JD32 116 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 ERICH2A1L162 156 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 CLDN24A6NM45 220 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 A8MWV9 139 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 FAM25EA8MYX2 175 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 C1orf196B1AJZ1 125 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 PSMD12O00232 456 aaPredicted RBP-0.23□□□□□ -2.45
VPS35-212ENST00000640313 OR7C1O76099 320 aaPredicted RBP-0.23□□□□□ -2.45
VPS35-212ENST00000640313 DEXIO95424 95 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 CRYZL1O95825 349 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 PPYP01298 95 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 C1QBP02746 253 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 SERPINE1P05121 402 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 C8GP07360 202 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 RBP1P09455 135 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 SMIM17P0DL12 118 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 CXCL8P10145 99 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 PDE6GP18545 87 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 PPIBP23284 216 aaKnown RBP-0.23□□□□□ -2.45
VPS35-212ENST00000640313 CASP1P29466 404 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 CASQ1P31415 396 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 DEFA3P59666 94 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 AP3S2P59780 193 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 SPCS3P61009 180 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 RPL37P61927 97 aaKnown RBP-0.23□□□□□ -2.45
VPS35-212ENST00000640313 OCIAD2Q56VL3 154 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 C8orf74Q6P047 294 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 C22orf39Q6P5X5 142 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 C2orf82Q6UX34 121 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 TMEM14EPQ6UXP3 125 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 C4orf22Q6V702 233 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 Q6ZQY7 126 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 DEFB132Q7Z7B7 95 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 Q86TA4 180 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 OR5AS1Q8N127 324 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 OR6V1Q8N148 313 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 CLDN22Q8N7P3 220 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 PPTC7Q8NI37 304 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 SLC25A40Q8TBP6 338 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 CT55Q8WUE5 264 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 RAB37Q96AX2 223 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 PLEKHB2Q96CS7 222 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 C8orf76Q96K31 380 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 LINC00208Q96KT6 92 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 LLPHQ9BRT6 129 aaKnown RBP-0.23□□□□□ -2.45
VPS35-212ENST00000640313 LINC00467Q9BRT7 94 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 LIMD2Q9BT23 127 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 GGACTQ9BVM4 153 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 VPS29Q9UBQ0 182 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 RNF11Q9Y3C5 154 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 LSM5Q9Y4Y9 91 aaKnown RBP-0.23□□□□□ -2.45
VPS35-212ENST00000640313 LY96Q9Y6Y9 160 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 RYR3Q15413 4870 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 RYR1P21817 5038 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 DNAH11Q96DT5 4516 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 MAP3K5Q99683 1374 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 SCN8AQ9UQD0 1980 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 KDM6AO15550 1401 aaPredicted RBP-0.23□□□□□ -2.45
VPS35-212ENST00000640313 ZFYVE9O95405 1425 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 NCOA1Q15788 1441 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 FANCMQ8IYD8 2048 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 ARHGEF11O15085 1522 aa-0.23□□□□□ -2.45
VPS35-212ENST00000640313 ABCA1O95477 2261 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 DNAH1Q9P2D7 4330 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 SPTBN2O15020 2390 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 STAB2Q8WWQ8 2551 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 DNAH8Q96JB1 4490 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 hCG_1818297A0A087WSY0 165 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 TRAV27A0A087WT01 109 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 TRGV10A0A0A0MS01 117 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 TRAV4A0A0B4J268 109 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 NBDYA0A0U1RRE5 68 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 A8MT66 165 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 PIRO00625 290 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 PIAS1O75925 651 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 HAND1O96004 215 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 IFNA5P01569 189 aa-0.24□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms