RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 H3BMM0 161 aa7.32□□□□□ -1.24
VCL-206ENST00000623461 ZNF688P0C7X2 276 aa7.32□□□□□ -1.24
VCL-206ENST00000623461 CSRP2Q16527 193 aa7.32□□□□□ -1.24
VCL-206ENST00000623461 FOXL2NBQ6ZUU3 175 aa7.32□□□□□ -1.24
VCL-206ENST00000623461 UBE2WQ96B02 151 aa7.32□□□□□ -1.24
VCL-206ENST00000623461 VDAC2P45880 294 aaPredicted RBP7.32□□□□□ -1.24
VCL-206ENST00000623461 NCR2O95944 276 aa7.32□□□□□ -1.24
VCL-206ENST00000623461 CEACAM8P31997 349 aaPredicted RBP7.32□□□□□ -1.24
VCL-206ENST00000623461 RNF144BQ7Z419 303 aa7.32□□□□□ -1.24
VCL-206ENST00000623461 SH2D1AO60880 128 aa7.32□□□□□ -1.24
VCL-206ENST00000623461 ZNF138P52744 262 aa7.32□□□□□ -1.24
VCL-206ENST00000623461 KLF5Q13887 457 aaPredicted RBP7.32□□□□□ -1.24
VCL-206ENST00000623461 CEND1Q8N111 149 aa7.32□□□□□ -1.24
VCL-206ENST00000623461 C11orf52Q96A22 123 aa7.32□□□□□ -1.24
VCL-206ENST00000623461 CDCP2Q5VXM1 449 aa7.32□□□□□ -1.24
VCL-206ENST00000623461 NKX2-8O15522 239 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 ETDBQ3ZM63 59 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 ZIC4Q8N9L1 334 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 SCRT1Q9BWW7 348 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 PLXNA4Q9HCM2 1894 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 NOTCH3Q9UM47 2321 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 Q6P435 159 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 KLHDC3Q9BQ90 382 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 SPTAN1Q13813 2472 aaKnown RBP7.31□□□□□ -1.24
VCL-206ENST00000623461 Q86TA4 180 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 FAM216BQ8N7L0 139 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 FAM57AQ8TBR7 257 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 IMMP1LQ96LU5 166 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 KIAA1549LQ6ZVL6 1849 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 DTX2Q86UW9 622 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 SSC4DQ8WTU2 575 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 NPIPB5A8MRT5 1133 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 PPP1R32Q7Z5V6 425 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 DPH3P1Q9H4G8 78 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 COL4A5P29400 1685 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 GAGE12JA6NER3 117 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 GAGE7O76087 117 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 GAGE12FP0CL80 117 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 GAGE12GP0CL81 117 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 GAGE12IP0CL82 117 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 GAGE4Q13068 117 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 WIPF2Q8TF74 440 aaPredicted RBP7.31□□□□□ -1.24
VCL-206ENST00000623461 VGLL1Q99990 258 aa7.31□□□□□ -1.24
VCL-206ENST00000623461 OVOL1O14753 267 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 IGHV1-2P23083 117 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 SMRP1Q8NCR6 262 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 MCRIP2Q9BUT9 160 aaKnown RBP7.3□□□□□ -1.24
VCL-206ENST00000623461 PLXNA2O75051 1894 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 TMEM167AQ8TBQ9 72 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 LOC102723996A0A087X1L8 192 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 B9A039 149 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 NBR2O15453 112 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 IGHV3-23P01764 117 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 CD28P10747 220 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 OR11H6Q8NGC7 330 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 RNASE8Q8TDE3 154 aaKnown RBP7.3□□□□□ -1.24
VCL-206ENST00000623461 DOCK11Q5JSL3 2073 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 IGKV1D-33P01593 117 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 IGKV1-33P01594 117 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 CLPSP04118 112 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 ATP5J2P56134 94 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 TMEM75Q8N9X5 138 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 SAP25Q8TEE9 199 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 UNQ6494/PRO21346Q6UXR6 183 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 NEGR1Q7Z3B1 354 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 EXOC3-AS1Q8N2X6 119 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 C1QTNF4Q9BXJ3 329 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 NCOR1O75376 2440 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 FCN3O75636 299 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 MYMXA0A1B0GTQ4 84 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 PMS2P5A8MQ11 134 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 PRSS46E5RG02 174 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 EFNA2O43921 213 aa7.3□□□□□ -1.24
VCL-206ENST00000623461 PCNX1Q96RV3 2341 aa7.29□□□□□ -1.24
VCL-206ENST00000623461 AMN1Q8IY45 258 aa7.29□□□□□ -1.24
VCL-206ENST00000623461 FGFBP3Q8TAT2 258 aa7.29□□□□□ -1.24
VCL-206ENST00000623461 C1orf147Q96MC9 270 aaPredicted RBP7.29□□□□□ -1.24
VCL-206ENST00000623461 DUX5Q96PT3 197 aa7.29□□□□□ -1.24
VCL-206ENST00000623461 VCYO14598 125 aa7.29□□□□□ -1.24
VCL-206ENST00000623461 TRAV40A0A0B4J280 105 aa7.29□□□□□ -1.24
VCL-206ENST00000623461 IGHV3-66A0A0C4DH42 116 aa7.29□□□□□ -1.24
VCL-206ENST00000623461 TRGV3P03979 118 aa7.29□□□□□ -1.24
VCL-206ENST00000623461 RPUSD1Q9UJJ7 312 aaKnown RBP7.29□□□□□ -1.24
VCL-206ENST00000623461 IGLV3-19P01714 112 aa7.29□□□□□ -1.24
VCL-206ENST00000623461 PPIFP30405 207 aaKnown RBP7.29□□□□□ -1.24
VCL-206ENST00000623461 CENPVQ7Z7K6 275 aaPredicted RBP7.29□□□□□ -1.24
VCL-206ENST00000623461 IGHV3-35A0A0C4DH35 117 aa7.29□□□□□ -1.24
VCL-206ENST00000623461 LINC00473A8K010 186 aa7.29□□□□□ -1.24
VCL-206ENST00000623461 SLC25A20O43772 301 aa7.29□□□□□ -1.24
VCL-206ENST00000623461 FAM104BQ5XKR9 115 aa7.29□□□□□ -1.24
VCL-206ENST00000623461 MRPL14Q6P1L8 145 aaKnown RBP7.29□□□□□ -1.24
VCL-206ENST00000623461 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.29□□□□□ -1.245e-7■■■■□ 21.9
VCL-206ENST00000623461 TRAV3A0A0B4J244 114 aa7.29□□□□□ -1.24
VCL-206ENST00000623461 CMC4P56277 68 aaPredicted RBP7.29□□□□□ -1.24
VCL-206ENST00000623461 CYYR1Q96J86 154 aa7.29□□□□□ -1.24
VCL-206ENST00000623461 MBNL3Q9NUK0 354 aaKnown RBP7.29□□□□□ -1.24
VCL-206ENST00000623461 FXYD7P58549 80 aa7.28□□□□□ -1.24
VCL-206ENST00000623461 HAPLN4Q86UW8 402 aa7.28□□□□□ -1.24
VCL-206ENST00000623461 TMEM133Q9H2Q1 129 aa7.28□□□□□ -1.24
VCL-206ENST00000623461 S4R3C0 116 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms