RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 ASCL2Q99929 193 aa7.48□□□□□ -1.21
GGA3-223ENST00000621870 SLC25A39Q9BZJ4 359 aaPredicted RBP7.48□□□□□ -1.21
GGA3-223ENST00000621870 SEPSECSQ9HD40 501 aaKnown RBP7.48□□□□□ -1.21
GGA3-223ENST00000621870 COL4A3Q01955 1670 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 TRGV4A0A0C4DH28 118 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 RPL13AP40429 203 aaKnown RBP7.47□□□□□ -1.21
GGA3-223ENST00000621870 DEFB113Q30KQ7 82 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 SPATA31B1PQ5VZV4 182 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 KCNS1Q96KK3 526 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 VPS25Q9BRG1 176 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 WFDC1Q9HC57 220 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 RFNGQ9Y644 331 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 IFITM10A6NMD0 228 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 SRRM4A7MD48 611 aaKnown RBP7.47□□□□□ -1.21
GGA3-223ENST00000621870 Q6ZS49 121 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 RPP25LQ8N5L8 163 aaKnown RBP7.47□□□□□ -1.21
GGA3-223ENST00000621870 OR5AN1Q8NGI8 311 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 RNF138Q8WVD3 245 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 EYSQ5T1H1 3165 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 IGKV2-40A0A087WW87 121 aaPredicted RBP7.47□□□□□ -1.21
GGA3-223ENST00000621870 TRBV7-1A0A0A6YYK4 115 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 TRAV21A0A0B4J279 112 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 IGKV2D-40P01614 121 aaPredicted RBP7.47□□□□□ -1.21
GGA3-223ENST00000621870 RNASE2P10153 161 aaKnown RBP7.47□□□□□ -1.21
GGA3-223ENST00000621870 FXYD7P58549 80 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 CCL20P78556 96 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 DIAPH2-AS1Q14236 149 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 C17orf58Q2M2W7 97 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 TEX36Q5VZQ5 186 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 TMEM14EPQ6UXP3 125 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 FAM110DQ8TAY7 271 aaPredicted RBP7.47□□□□□ -1.21
GGA3-223ENST00000621870 FMC1Q96HJ9 113 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 CTSZQ9UBR2 303 aa7.47□□□□□ -1.21
GGA3-223ENST00000621870 HIGD1CA8MV81 97 aa7.46□□□□□ -1.21
GGA3-223ENST00000621870 OR11H12B2RN74 326 aa7.46□□□□□ -1.21
GGA3-223ENST00000621870 RPP21Q9H633 154 aaKnown RBP7.46□□□□□ -1.21
GGA3-223ENST00000621870 LTBP2Q14767 1821 aa7.46□□□□□ -1.21
GGA3-223ENST00000621870 BPTFQ12830 3046 aa7.46□□□□□ -1.21
GGA3-223ENST00000621870 C15orf62A8K5M9 175 aa7.46□□□□□ -1.22
GGA3-223ENST00000621870 TMEM249Q2WGJ8 235 aa7.46□□□□□ -1.22
GGA3-223ENST00000621870 IGHV4-39P01824 125 aa7.46□□□□□ -1.22
GGA3-223ENST00000621870 PAX1P15863 534 aa7.46□□□□□ -1.22
GGA3-223ENST00000621870 OR10AG1Q8NH19 301 aa7.46□□□□□ -1.22
GGA3-223ENST00000621870 IGFBPL1Q8WX77 278 aa7.46□□□□□ -1.22
GGA3-223ENST00000621870 PRELID3AQ96N28 172 aa7.46□□□□□ -1.22
GGA3-223ENST00000621870 IMMP2LQ96T52 175 aa7.46□□□□□ -1.22
GGA3-223ENST00000621870 GSN-AS1Q9NRJ2 163 aa7.46□□□□□ -1.22
GGA3-223ENST00000621870 CARHSP1Q9Y2V2 147 aaKnown RBP7.46□□□□□ -1.22
GGA3-223ENST00000621870 HOXA3O43365 443 aaPredicted RBP7.45□□□□□ -1.22
GGA3-223ENST00000621870 NDUFB8O95169 186 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 IGHV2-5P01817 119 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 Q8TAT8 98 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 TRGV9Q99603 122 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 PCNX3Q9H6A9 2034 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 TRAV8-1A0A0A6YYK1 113 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 ITGB1BP1O14713 200 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 TDGF1P3P51864 188 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 DEFB131AP59861 70 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 DAZ1Q9NQZ3 744 aaKnown RBP7.45□□□□□ -1.22
GGA3-223ENST00000621870 KAAG1Q9UBP8 84 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 ZFP30Q9Y2G7 519 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 OVOL1O14753 267 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 IGHV4-59P01825 116 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 ZNF134P52741 427 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 DEFB112Q30KQ8 113 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 SPRNQ5BIV9 151 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 PAPPA-AS1Q5QFB9 102 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 MGST2Q99735 147 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 TOMM7Q9P0U1 55 aa7.45□□□□□ -1.22
GGA3-223ENST00000621870 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.44□□□□□ -1.22
GGA3-223ENST00000621870 J3QLI3 93 aa7.44□□□□□ -1.22
GGA3-223ENST00000621870 CA1P00915 261 aaPredicted RBP7.44□□□□□ -1.22
GGA3-223ENST00000621870 GCSHP23434 173 aa7.44□□□□□ -1.22
GGA3-223ENST00000621870 GPR61Q9BZJ8 451 aa7.44□□□□□ -1.22
GGA3-223ENST00000621870 TPSG1Q9NRR2 321 aa7.44□□□□□ -1.22
GGA3-223ENST00000621870 KLF2Q9Y5W3 355 aaPredicted RBP7.44□□□□□ -1.22
GGA3-223ENST00000621870 C5orf52A6NGY3 159 aa7.44□□□□□ -1.22
GGA3-223ENST00000621870 H3BVH4 76 aa7.44□□□□□ -1.22
GGA3-223ENST00000621870 STAG3L2P0CL84 134 aa7.44□□□□□ -1.22
GGA3-223ENST00000621870 STAG3L3P0CL85 134 aa7.44□□□□□ -1.22
GGA3-223ENST00000621870 SRSF3P84103 164 aaKnown RBP7.44□□□□□ -1.22
GGA3-223ENST00000621870 SRSF4Q08170 494 aaKnown RBP7.44□□□□□ -1.22
GGA3-223ENST00000621870 COL4A4P53420 1690 aaPredicted RBP7.44□□□□□ -1.22
GGA3-223ENST00000621870 CXorf65A6NEN9 183 aa7.44□□□□□ -1.22
GGA3-223ENST00000621870 RPL23P62829 140 aaKnown RBP7.44□□□□□ -1.22
GGA3-223ENST00000621870 MEIG1Q5JSS6 88 aa7.44□□□□□ -1.22
GGA3-223ENST00000621870 TMEM170BQ5T4T1 132 aa7.44□□□□□ -1.22
GGA3-223ENST00000621870 OCC1Q8TAD7 63 aa7.44□□□□□ -1.22
GGA3-223ENST00000621870 IL36BQ9NZH7 164 aa7.44□□□□□ -1.22
GGA3-223ENST00000621870 TRAV12-3A0A0B4J271 114 aa7.43□□□□□ -1.22
GGA3-223ENST00000621870 C7orf71A4D174 169 aa7.43□□□□□ -1.22
GGA3-223ENST00000621870 FBLL1A6NHQ2 334 aaKnown RBP7.43□□□□□ -1.22
GGA3-223ENST00000621870 C9orf139Q6ZV77 190 aa7.43□□□□□ -1.22
GGA3-223ENST00000621870 RNF166Q96A37 237 aaPredicted RBP7.43□□□□□ -1.22
GGA3-223ENST00000621870 EML6Q6ZMW3 1958 aa7.43□□□□□ -1.22
GGA3-223ENST00000621870 TCF21O43680 179 aa7.43□□□□□ -1.22
GGA3-223ENST00000621870 TMEM50AO95807 157 aa7.43□□□□□ -1.22
GGA3-223ENST00000621870 IGHV2-70P01814 119 aa7.43□□□□□ -1.22
GGA3-223ENST00000621870 OR11H1Q8NG94 326 aa7.43□□□□□ -1.22
GGA3-223ENST00000621870 TMEM101Q96IK0 257 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms