RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 FOXF1Q12946 379 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 RBMY1FQ15415 496 aaKnown RBP4.1□□□□□ -1.75
VPS13D-213ENST00000613099 ZNF492Q9P255 531 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 VPREB3Q9UKI3 123 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 Q6ZS49 121 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 HAX1O00165 279 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 YLPM1P49750 1951 aaKnown RBP4.1□□□□□ -1.75
VPS13D-213ENST00000613099 ZIC3O60481 467 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 CECR9P0C854 216 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 CNTFRP26992 372 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 COL9A1P20849 921 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 RPS28P62857 69 aaKnown RBP4.1□□□□□ -1.75
VPS13D-213ENST00000613099 PRSS53Q2L4Q9 553 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 THSD7BQ9C0I4 1608 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 FAM236AA0A1B0GUQ0 79 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 FAM236BA0A1B0GV22 79 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 LINC00271P0C7V0 271 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 LINC00643Q86TS7 51 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 U3KQE9 123 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 PTPN13Q12923 2485 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 CCL1P22362 96 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 NTF4P34130 210 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 C11orf52Q96A22 123 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 D6R8Y8 96 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 C1orf195Q5TG92 126 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 SHISA2Q6UWI4 295 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 Q6ZNB5 142 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 ABHD12Q8N2K0 398 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 C6orf106Q9H6K1 298 aaPredicted RBP4.09□□□□□ -1.75
VPS13D-213ENST00000613099 K7ESM1 405 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 VEGFBP49765 207 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 ZC2HC1BQ5TFG8 222 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 Q6Q795 121 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 CCDC140Q96MF4 163 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 CXXC4Q9H2H0 198 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 ZNF747Q9BV97 191 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 K7EMI3 77 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 MGPP08493 103 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 SPATA46Q5T0L3 261 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 A0A1W2PNR3 127 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 SOCS3O14543 225 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 SPATA31B1PQ5VZV4 182 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 NOTCH2Q04721 2471 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 LINC00305Q7Z4B0 112 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 TMEM54Q969K7 222 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 KLK15Q9H2R5 256 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 CHD8Q9HCK8 2581 aa4.09□□□□□ -1.75
VPS13D-213ENST00000613099 VPREB1P12018 145 aa4.09□□□□□ -1.76
VPS13D-213ENST00000613099 LTBP2Q14767 1821 aa4.09□□□□□ -1.76
VPS13D-213ENST00000613099 C19orf54Q5BKX5 351 aa4.09□□□□□ -1.76
VPS13D-213ENST00000613099 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.09□□□□□ -1.76
VPS13D-213ENST00000613099 DECR2Q9NUI1 292 aa4.09□□□□□ -1.76
VPS13D-213ENST00000613099 PRO0628Q9UI54 55 aa4.09□□□□□ -1.76
VPS13D-213ENST00000613099 NDUFC2-KCTD14E9PQ53 114 aa4.09□□□□□ -1.76
VPS13D-213ENST00000613099 GLMPQ8WWB7 406 aa4.09□□□□□ -1.76
VPS13D-213ENST00000613099 TNRC6BQ9UPQ9 1833 aaKnown RBP4.09□□□□□ -1.76
VPS13D-213ENST00000613099 ANKRD11Q6UB99 2663 aaPredicted RBP4.08□□□□□ -1.76
VPS13D-213ENST00000613099 WNT2P09544 360 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 CBLN3Q6UW01 205 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 LCNL1Q6ZST4 164 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 ZNF441Q8N8Z8 693 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 A0A096LPE4 126 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 A0A1W2PPZ6 126 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 CRXO43186 299 aaPredicted RBP4.08□□□□□ -1.76
VPS13D-213ENST00000613099 DSCR4P56555 118 aaPredicted RBP4.08□□□□□ -1.76
VPS13D-213ENST00000613099 VN1R4Q7Z5H5 301 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 PILRAQ9UKJ1 303 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 PRRG2O14669 202 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 RNASE1P07998 156 aaKnown RBP4.08□□□□□ -1.76
VPS13D-213ENST00000613099 CTRLP40313 264 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 SLC25A47Q6Q0C1 308 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 LINC00114Q6XXX2 140 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 DEPPQ9NTK1 212 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 PEMTQ9UBM1 199 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 LHFPL6Q9Y693 200 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 C1QL2Q7Z5L3 287 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 ZNF462Q96JM2 2506 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 K7EQS6 105 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 ZNF32P17041 273 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 MRPS36P82909 103 aaKnown RBP4.08□□□□□ -1.76
VPS13D-213ENST00000613099 CCL14Q16627 93 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 CCL8P80075 99 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 PSG7Q13046 419 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 BRK1Q8WUW1 75 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 NRTNQ99748 197 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 CSRP2Q16527 193 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 FOXB1Q99853 325 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 MALRD1Q5VYJ5 2156 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 UFSP1Q6NVU6 142 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 Q9H3A6 140 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 SIGLEC9Q9Y336 463 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 IGKV1D-42A0A075B6H8 117 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 SPAARA0A1B0GVQ0 90 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 TM4SF5O14894 197 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 KLK10O43240 276 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 OSR1Q8TAX0 266 aaPredicted RBP4.08□□□□□ -1.76
VPS13D-213ENST00000613099 ZFYVE26Q68DK2 2539 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 CCDC179H3BU77 68 aa4.08□□□□□ -1.76
VPS13D-213ENST00000613099 PSG4Q00888 419 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms