RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 A0A0B4J2A0 478 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 EPM2AB3EWF7 344 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 FAM25AB3EWG3 89 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 FAM25CB3EWG5 89 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 FAM25GB3EWG6 89 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 GABARAPH6UMI1 98 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 DUSP14O95147 198 aaKnown RBP4.21□□□□□ -1.74
VRK3-220ENST00000600259 GABARAPO95166 117 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 TNFAIP8O95379 198 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 INAFM2P0DMQ5 153 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 GATA2P23769 480 aaPredicted RBP4.21□□□□□ -1.74
VRK3-220ENST00000600259 TAS2R60P59551 318 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 SSBP1Q04837 148 aaKnown RBP4.21□□□□□ -1.74
VRK3-220ENST00000600259 SMCO1Q147U7 214 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 CTF1Q16619 201 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 SAMD13Q5VXD3 122 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 GPR141Q7Z602 305 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 LYPD1Q8N2G4 141 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 RNF182Q8N6D2 247 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 OR4C16Q8NGL9 310 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 RNASE8Q8TDE3 154 aaKnown RBP4.21□□□□□ -1.74
VRK3-220ENST00000600259 RXFP4Q8TDU9 374 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 ZNF503Q96F45 646 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 TMEM208Q9BTX3 173 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 SLC25A39Q9BZJ4 359 aaPredicted RBP4.21□□□□□ -1.74
VRK3-220ENST00000600259 NAA50Q9GZZ1 169 aaKnown RBP4.21□□□□□ -1.74
VRK3-220ENST00000600259 SHPKQ9UHJ6 478 aa4.21□□□□□ -1.74
VRK3-220ENST00000600259 C14orf166Q9Y224 244 aaKnown RBP4.21□□□□□ -1.74
VRK3-220ENST00000600259 TIMM8BQ9Y5J9 83 aaPredicted RBP4.21□□□□□ -1.74
VRK3-220ENST00000600259 A0A087WXM4 84 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 A0A1W2PPQ1 181 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 BOLA2-SMG1P6H3BVE0 249 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 ZNF701M0R085 212 aaPredicted RBP4.2□□□□□ -1.74
VRK3-220ENST00000600259 CTDSP2O14595 271 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 CFDP00746 253 aaPredicted RBP4.2□□□□□ -1.74
VRK3-220ENST00000600259 INSP01308 110 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 FABP1P07148 127 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 ZNF182P17025 639 aaPredicted RBP4.2□□□□□ -1.74
VRK3-220ENST00000600259 HOXA5P20719 270 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 FUSP35637 526 aaKnown RBP eCLIP4.2□□□□□ -1.74
VRK3-220ENST00000600259 GALR1P47211 349 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 KIR3DS1Q14943 382 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 GGNBP1Q5YKI7 109 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 MZT2AQ6P582 158 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 ZNF493Q6ZR52 646 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 OR8A1Q8NGG7 326 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 OR51S1Q8NGJ8 323 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 OR1B1Q8NGR6 318 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 SLC35E1Q96K37 410 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 LINC01587Q99440 93 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 SLC25A22Q9H936 323 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 VCX3AQ9NNX9 186 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 NOP10Q9NPE3 64 aaKnown RBP4.2□□□□□ -1.74
VRK3-220ENST00000600259 KCNIP3Q9Y2W7 256 aa4.2□□□□□ -1.74
VRK3-220ENST00000600259 TRAV26-1A0A087WT03 109 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 ANKRD20A5PA0PJZ0 165 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 DISC1C4P0D8 188 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 H3BNG1 76 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 H3BRN7 92 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 CTDSPLO15194 276 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 MRPS12O15235 138 aaKnown RBP4.19□□□□□ -1.74
VRK3-220ENST00000600259 PRB4P10163 310 aaPredicted RBP4.19□□□□□ -1.74
VRK3-220ENST00000600259 ORM2P19652 201 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 CXCL3P19876 107 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 PLP1P60201 277 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 DLK1P80370 383 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 CLINT1Q14677 625 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 PSG3Q16557 428 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 TTC32Q5I0X7 151 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 TMEM144Q7Z5S9 345 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 TMEM256Q8N2U0 113 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 ZBTB8BQ8NAP8 495 aaPredicted RBP4.19□□□□□ -1.74
VRK3-220ENST00000600259 C15orf40Q8WUR7 153 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 SMIM4Q8WVI0 70 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 PPP1R14BQ96C90 147 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 GNPNAT1Q96EK6 184 aaPredicted RBP4.19□□□□□ -1.74
VRK3-220ENST00000600259 VSIG2Q96IQ7 327 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 GPR82Q96P67 336 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 SOSTQ9BQB4 213 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 SHANK2-AS3Q9BTD1 123 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 ZNF586Q9NXT0 402 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 NDUFA13Q9P0J0 144 aa4.19□□□□□ -1.74
VRK3-220ENST00000600259 MRPS16Q9Y3D3 137 aaKnown RBP4.19□□□□□ -1.74
VRK3-220ENST00000600259 A0A087X0K7 114 aa4.18□□□□□ -1.74
VRK3-220ENST00000600259 A0A096LPF7 62 aa4.18□□□□□ -1.74
VRK3-220ENST00000600259 A0A0J9YY99 117 aa4.18□□□□□ -1.74
VRK3-220ENST00000600259 PMS2P5A8MQ11 134 aa4.18□□□□□ -1.74
VRK3-220ENST00000600259 AKAIN1P0CW23 69 aa4.18□□□□□ -1.74
VRK3-220ENST00000600259 IAPPP10997 89 aa4.18□□□□□ -1.74
VRK3-220ENST00000600259 SLC25A6P12236 298 aa4.18□□□□□ -1.74
VRK3-220ENST00000600259 M6PRP20645 277 aa4.18□□□□□ -1.74
VRK3-220ENST00000600259 LINC00315P59091 139 aa4.18□□□□□ -1.74
VRK3-220ENST00000600259 KRTAP10-1P60331 282 aa4.18□□□□□ -1.74
VRK3-220ENST00000600259 MRPS10P82664 201 aaKnown RBP4.18□□□□□ -1.74
VRK3-220ENST00000600259 OR5I1Q13606 314 aa4.18□□□□□ -1.74
VRK3-220ENST00000600259 C4orf46Q504U0 113 aa4.18□□□□□ -1.74
VRK3-220ENST00000600259 PATE2Q6UY27 113 aa4.18□□□□□ -1.74
VRK3-220ENST00000600259 LRTM2Q8N967 370 aa4.18□□□□□ -1.74
VRK3-220ENST00000600259 BPIFCQ8NFQ6 507 aa4.18□□□□□ -1.74
VRK3-220ENST00000600259 TMEM263Q8WUH6 116 aaKnown RBP4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms