RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 ADGBQ8N7X0 1667 aa0.79□□□□□ -2.28
SMCHD1-204ENST00000581226 ASCC3Q8N3C0 2202 aaKnown RBP0.79□□□□□ -2.28
SMCHD1-204ENST00000581226 CCL25O15444 150 aa0.79□□□□□ -2.28
SMCHD1-204ENST00000581226 CCL16O15467 120 aa0.79□□□□□ -2.28
SMCHD1-204ENST00000581226 IFNA1P01562 189 aa0.79□□□□□ -2.28
SMCHD1-204ENST00000581226 CSN2P05814 226 aa0.79□□□□□ -2.28
SMCHD1-204ENST00000581226 CXCL1P09341 107 aa0.79□□□□□ -2.28
SMCHD1-204ENST00000581226 Q8TAT8 98 aa0.79□□□□□ -2.28
SMCHD1-204ENST00000581226 LINC00526Q96FQ7 95 aa0.79□□□□□ -2.28
SMCHD1-204ENST00000581226 YPEL2Q96QA6 119 aa0.79□□□□□ -2.28
SMCHD1-204ENST00000581226 LYSMD1Q96S90 227 aa0.79□□□□□ -2.28
SMCHD1-204ENST00000581226 GPX7Q96SL4 187 aaPredicted RBP0.79□□□□□ -2.28
SMCHD1-204ENST00000581226 PRRT1Q99946 306 aa0.79□□□□□ -2.28
SMCHD1-204ENST00000581226 SH3BGRL3Q9H299 93 aa0.79□□□□□ -2.28
SMCHD1-204ENST00000581226 FANCMQ8IYD8 2048 aa0.79□□□□□ -2.28
SMCHD1-204ENST00000581226 TCRBV4S1A1TA0A5B7 111 aa0.78□□□□□ -2.28
SMCHD1-204ENST00000581226 TLCD2A6NGC4 264 aa0.78□□□□□ -2.28
SMCHD1-204ENST00000581226 BANF1O75531 89 aa0.78□□□□□ -2.28
SMCHD1-204ENST00000581226 HLA-EP13747 358 aa0.78□□□□□ -2.28
SMCHD1-204ENST00000581226 NFYBP25208 207 aa0.78□□□□□ -2.28
SMCHD1-204ENST00000581226 RPL19P84098 196 aaKnown RBP0.78□□□□□ -2.28
SMCHD1-204ENST00000581226 BCL2L15Q5TBC7 163 aa0.78□□□□□ -2.28
SMCHD1-204ENST00000581226 GDF5OSQ5U4N7 250 aa0.78□□□□□ -2.28
SMCHD1-204ENST00000581226 ZNF833PQ6ZTB9 187 aa0.78□□□□□ -2.28
SMCHD1-204ENST00000581226 OR2T35Q8NGX2 323 aa0.78□□□□□ -2.28
SMCHD1-204ENST00000581226 GPER1Q99527 375 aa0.78□□□□□ -2.28
SMCHD1-204ENST00000581226 CCDC94Q9BW85 323 aaPredicted RBP0.78□□□□□ -2.28
SMCHD1-204ENST00000581226 NPCDR1Q9BY65 106 aa0.78□□□□□ -2.28
SMCHD1-204ENST00000581226 LYRM2Q9NU23 88 aaPredicted RBP0.78□□□□□ -2.28
SMCHD1-204ENST00000581226 RASL12Q9NYN1 266 aa0.78□□□□□ -2.28
SMCHD1-204ENST00000581226 RFX7Q2KHR2 1363 aa0.78□□□□□ -2.28
SMCHD1-204ENST00000581226 CD109Q6YHK3 1445 aa0.78□□□□□ -2.28
SMCHD1-204ENST00000581226 ANKRD31Q8N7Z5 1873 aa0.78□□□□□ -2.29
SMCHD1-204ENST00000581226 ZFC3H1O60293 1989 aaKnown RBP0.77□□□□□ -2.29
SMCHD1-204ENST00000581226 DUXBA0A1W2PPF3 345 aa0.77□□□□□ -2.29
SMCHD1-204ENST00000581226 E7EUB6 86 aa0.77□□□□□ -2.29
SMCHD1-204ENST00000581226 G3V2T6 193 aa0.77□□□□□ -2.29
SMCHD1-204ENST00000581226 H7C1C5 153 aa0.77□□□□□ -2.29
SMCHD1-204ENST00000581226 GGCTO75223 188 aaKnown RBP0.77□□□□□ -2.29
SMCHD1-204ENST00000581226 NDUFC2O95298 119 aa0.77□□□□□ -2.29
SMCHD1-204ENST00000581226 PHBP35232 272 aa0.77□□□□□ -2.29
SMCHD1-204ENST00000581226 GNG10P50151 68 aa0.77□□□□□ -2.29
SMCHD1-204ENST00000581226 DSCR4P56555 118 aaPredicted RBP0.77□□□□□ -2.29
SMCHD1-204ENST00000581226 TAS2R41P59536 307 aa0.77□□□□□ -2.29
SMCHD1-204ENST00000581226 LCN6P62502 163 aa0.77□□□□□ -2.29
SMCHD1-204ENST00000581226 MPV17LQ2QL34 196 aa0.77□□□□□ -2.29
SMCHD1-204ENST00000581226 ZC2HC1AQ96GY0 325 aa0.77□□□□□ -2.29
SMCHD1-204ENST00000581226 LINC00467Q9BRT7 94 aa0.77□□□□□ -2.29
SMCHD1-204ENST00000581226 TAS2R7Q9NYW3 318 aa0.77□□□□□ -2.29
SMCHD1-204ENST00000581226 UFC1Q9Y3C8 167 aa0.77□□□□□ -2.29
SMCHD1-204ENST00000581226 NUP210Q8TEM1 1887 aaPredicted RBP0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 CECR2Q9BXF3 1484 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 UHRF1BP1Q6BDS2 1440 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 A0A087WSZ3 146 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 TRBV6-4A0A1B0GX49 114 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 ODAMA1E959 279 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 K7ERJ3 54 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 TRGC2P03986 189 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 G0S2P27469 103 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 CRYBA4P53673 196 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 ARPP19P56211 112 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 MSMO1Q15800 293 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 SNCBQ16143 134 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 LTC4SQ16873 150 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 PPTC7Q8NI37 304 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 TMEM254Q8TBM7 123 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 POP5Q969H6 163 aaKnown RBP0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 ZHX1-C8orf76Q96EF9 292 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 POPDC3Q9HBV1 291 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 STOML2Q9UJZ1 356 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 RNF11Q9Y3C5 154 aa0.76□□□□□ -2.29
SMCHD1-204ENST00000581226 NISCHQ9Y2I1 1504 aa0.75□□□□□ -2.29
SMCHD1-204ENST00000581226 TNS3Q68CZ2 1445 aa0.75□□□□□ -2.29
SMCHD1-204ENST00000581226 AKR1C8PQ5T2L2 129 aa0.75□□□□□ -2.29
SMCHD1-204ENST00000581226 GRINAQ7Z429 371 aa0.75□□□□□ -2.29
SMCHD1-204ENST00000581226 TMED4Q7Z7H5 227 aa0.75□□□□□ -2.29
SMCHD1-204ENST00000581226 ZGRF1Q86YA3 2104 aa0.75□□□□□ -2.29
SMCHD1-204ENST00000581226 LINC00052Q96N35 136 aa0.75□□□□□ -2.29
SMCHD1-204ENST00000581226 GGACTQ9BVM4 153 aa0.75□□□□□ -2.29
SMCHD1-204ENST00000581226 OR2J1Q9GZK6 312 aa0.75□□□□□ -2.29
SMCHD1-204ENST00000581226 PBOV1Q9GZY1 135 aa0.75□□□□□ -2.29
SMCHD1-204ENST00000581226 SSR3Q9UNL2 185 aa0.75□□□□□ -2.29
SMCHD1-204ENST00000581226 TANC2Q9HCD6 1990 aa0.74□□□□□ -2.29
SMCHD1-204ENST00000581226 PTPRDP23468 1912 aa0.74□□□□□ -2.29
SMCHD1-204ENST00000581226 TRAV10A0A0B4J240 114 aa0.74□□□□□ -2.29
SMCHD1-204ENST00000581226 RIIAD1A6NNX1 92 aa0.74□□□□□ -2.29
SMCHD1-204ENST00000581226 CD2P06729 351 aa0.74□□□□□ -2.29
SMCHD1-204ENST00000581226 GLRXP35754 106 aa0.74□□□□□ -2.29
SMCHD1-204ENST00000581226 TMBIM6P55061 237 aa0.74□□□□□ -2.29
SMCHD1-204ENST00000581226 POU6F1Q14863 301 aa0.74□□□□□ -2.29
SMCHD1-204ENST00000581226 EIF5AL1Q6IS14 154 aaKnown RBP0.74□□□□□ -2.29
SMCHD1-204ENST00000581226 TMEM14EPQ6UXP3 125 aa0.74□□□□□ -2.29
SMCHD1-204ENST00000581226 ST6GALNAC3Q8NDV1 305 aa0.74□□□□□ -2.29
SMCHD1-204ENST00000581226 OR13C6PQ8NH95 151 aa0.74□□□□□ -2.29
SMCHD1-204ENST00000581226 LY96Q9Y6Y9 160 aa0.74□□□□□ -2.29
SMCHD1-204ENST00000581226 MED12Q93074 2177 aa0.74□□□□□ -2.29
SMCHD1-204ENST00000581226 SYNMO15061 1565 aa0.74□□□□□ -2.29
SMCHD1-204ENST00000581226 TENM3Q9P273 2699 aa0.73□□□□□ -2.29
SMCHD1-204ENST00000581226 PIK3C2AO00443 1686 aa0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms