RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 IL34Q6ZMJ4 242 aa12.27□□□□□ -0.45
SS18-211ENST00000578954 STXBP6Q8NFX7 210 aa12.27□□□□□ -0.45
SS18-211ENST00000578954 OR9G4Q8NGQ1 327 aa12.27□□□□□ -0.45
SS18-211ENST00000578954 SUN5Q8TC36 379 aa12.27□□□□□ -0.45
SS18-211ENST00000578954 SFT2D1Q8WV19 159 aa12.27□□□□□ -0.45
SS18-211ENST00000578954 NARS2Q96I59 477 aaKnown RBP12.27□□□□□ -0.45
SS18-211ENST00000578954 PEMTQ9UBM1 199 aa12.27□□□□□ -0.45
SS18-211ENST00000578954 SMPXQ9UHP9 88 aa12.27□□□□□ -0.45
SS18-211ENST00000578954 CHEK1O14757 476 aa12.26□□□□□ -0.45
SS18-211ENST00000578954 HMGB3O15347 200 aaKnown RBP12.26□□□□□ -0.45
SS18-211ENST00000578954 CXorf1O96002 111 aa12.26□□□□□ -0.45
SS18-211ENST00000578954 ARL14EPLP0DKL9 152 aa12.26□□□□□ -0.45
SS18-211ENST00000578954 PMS2P11Q13670 270 aa12.26□□□□□ -0.45
SS18-211ENST00000578954 LEMD1Q68G75 181 aa12.26□□□□□ -0.45
SS18-211ENST00000578954 PCNPQ8WW12 178 aaKnown RBP12.26□□□□□ -0.45
SS18-211ENST00000578954 GLMPQ8WWB7 406 aa12.26□□□□□ -0.45
SS18-211ENST00000578954 GPR82Q96P67 336 aa12.26□□□□□ -0.45
SS18-211ENST00000578954 TEX46H3BTG2 121 aa12.25□□□□□ -0.45
SS18-211ENST00000578954 OVOL1O14753 267 aa12.25□□□□□ -0.45
SS18-211ENST00000578954 RPL7P18124 248 aaKnown RBP12.25□□□□□ -0.45
SS18-211ENST00000578954 BMI1P35226 326 aa12.25□□□□□ -0.45
SS18-211ENST00000578954 FGF8P55075 233 aaPredicted RBP12.25□□□□□ -0.45
SS18-211ENST00000578954 ADAMTSL5Q6ZMM2 481 aa12.25□□□□□ -0.45
SS18-211ENST00000578954 BPIFA4PQ86YQ2 179 aa12.25□□□□□ -0.45
SS18-211ENST00000578954 C3orf56Q8N813 242 aa12.25□□□□□ -0.45
SS18-211ENST00000578954 LINC00482Q8N8I6 264 aa12.25□□□□□ -0.45
SS18-211ENST00000578954 RHPN1-AS1Q9BWJ2 59 aa12.25□□□□□ -0.45
SS18-211ENST00000578954 OR51M1Q9H341 326 aa12.25□□□□□ -0.45
SS18-211ENST00000578954 TMEM231Q9H6L2 316 aa12.25□□□□□ -0.45
SS18-211ENST00000578954 SIGLEC8Q9NYZ4 499 aa12.25□□□□□ -0.45
SS18-211ENST00000578954 COL6A5A8TX70 2615 aa12.25□□□□□ -0.45
SS18-211ENST00000578954 OR7C2O60412 319 aa12.24□□□□□ -0.45
SS18-211ENST00000578954 CSN3P07498 182 aa12.24□□□□□ -0.45
SS18-211ENST00000578954 IGLC2P0DOY2 106 aa12.24□□□□□ -0.45
SS18-211ENST00000578954 FOLR2P14207 255 aa12.24□□□□□ -0.45
SS18-211ENST00000578954 EDN2P20800 178 aa12.24□□□□□ -0.45
SS18-211ENST00000578954 CBLN1P23435 193 aa12.24□□□□□ -0.45
SS18-211ENST00000578954 GCHFRP30047 84 aa12.24□□□□□ -0.45
SS18-211ENST00000578954 RIPPLY3P57055 190 aa12.24□□□□□ -0.45
SS18-211ENST00000578954 OR8I2Q8N0Y5 310 aa12.24□□□□□ -0.45
SS18-211ENST00000578954 FXYD5Q96DB9 178 aa12.24□□□□□ -0.45
SS18-211ENST00000578954 GRAMD2BQ96HH9 432 aa12.24□□□□□ -0.45
SS18-211ENST00000578954 PAXXQ9BUH6 204 aa12.24□□□□□ -0.45
SS18-211ENST00000578954 WNK1Q9H4A3 2382 aa12.24□□□□□ -0.45
SS18-211ENST00000578954 IGHV3OR16-13A0A075B7E8 117 aa12.23□□□□□ -0.45
SS18-211ENST00000578954 A0A087X0K7 114 aa12.23□□□□□ -0.45
SS18-211ENST00000578954 IGHV3-49A0A0A0MS15 119 aa12.23□□□□□ -0.45
SS18-211ENST00000578954 IGHV3-74A0A0B4J1X5 117 aa12.23□□□□□ -0.45
SS18-211ENST00000578954 PF4P02776 101 aa12.23□□□□□ -0.45
SS18-211ENST00000578954 PYYP10082 97 aa12.23□□□□□ -0.45
SS18-211ENST00000578954 HIST1H1EP10412 219 aaKnown RBP12.23□□□□□ -0.45
SS18-211ENST00000578954 PSMB3P49720 205 aa12.23□□□□□ -0.45
SS18-211ENST00000578954 CCL20P78556 96 aa12.23□□□□□ -0.45
SS18-211ENST00000578954 ELOVL1Q9BW60 279 aa12.23□□□□□ -0.45
SS18-211ENST00000578954 HRH4Q9H3N8 390 aa12.23□□□□□ -0.45
SS18-211ENST00000578954 TMEM167BQ9NRX6 74 aa12.23□□□□□ -0.45
SS18-211ENST00000578954 IGHV3-66A0A0C4DH42 116 aa12.22□□□□□ -0.45
SS18-211ENST00000578954 UBE2L3P68036 154 aaKnown RBP12.22□□□□□ -0.45
SS18-211ENST00000578954 FAM90A2PQ658T7 463 aa12.22□□□□□ -0.45
SS18-211ENST00000578954 C17orf77Q96MU5 243 aa12.22□□□□□ -0.45
SS18-211ENST00000578954 TMPRSS5Q9H3S3 457 aa12.22□□□□□ -0.45
SS18-211ENST00000578954 MED9Q9NWA0 146 aa12.22□□□□□ -0.45
SS18-211ENST00000578954 SMAD5-AS1Q9Y6J3 95 aa12.22□□□□□ -0.45
SS18-211ENST00000578954 ARL2-SNX15V9GYD0 113 aa12.22□□□□□ -0.45
SS18-211ENST00000578954 M0QZ24 198 aa12.21□□□□□ -0.45
SS18-211ENST00000578954 CD5P06127 495 aa12.21□□□□□ -0.45
SS18-211ENST00000578954 GALR1P47211 349 aa12.21□□□□□ -0.45
SS18-211ENST00000578954 PPT1P50897 306 aa12.21□□□□□ -0.45
SS18-211ENST00000578954 SIGLEC15Q6ZMC9 328 aa12.21□□□□□ -0.45
SS18-211ENST00000578954 STAB1Q9NY15 2570 aa12.21□□□□□ -0.46
SS18-211ENST00000578954 A0A1B0GV50 99 aa12.2□□□□□ -0.46
SS18-211ENST00000578954 LINC00862A6NCI5 91 aa12.2□□□□□ -0.46
SS18-211ENST00000578954 HELTA6NFD8 242 aa12.2□□□□□ -0.46
SS18-211ENST00000578954 H3BQ15 152 aa12.2□□□□□ -0.46
SS18-211ENST00000578954 OR10J4P0C629 311 aa12.2□□□□□ -0.46
SS18-211ENST00000578954 NBEAP1P0C6P0 100 aa12.2□□□□□ -0.46
SS18-211ENST00000578954 MEOX2P50222 304 aa12.2□□□□□ -0.46
SS18-211ENST00000578954 PDE6HQ13956 83 aa12.2□□□□□ -0.46
SS18-211ENST00000578954 GUK1Q16774 197 aa12.2□□□□□ -0.46
SS18-211ENST00000578954 ZNF586Q9NXT0 402 aa12.2□□□□□ -0.46
SS18-211ENST00000578954 MLXQ9UH92 298 aa12.2□□□□□ -0.46
SS18-211ENST00000578954 TRBV19A0A075B6N1 114 aa12.19□□□□□ -0.46
SS18-211ENST00000578954 ZNF253O75346 499 aa12.19□□□□□ -0.46
SS18-211ENST00000578954 MDFIQ99750 246 aa12.19□□□□□ -0.46
SS18-211ENST00000578954 MANBALQ9NQG1 85 aa12.19□□□□□ -0.46
SS18-211ENST00000578954 A0A1W2PRE2 83 aa12.18□□□□□ -0.46
SS18-211ENST00000578954 ATF4P18848 351 aaPredicted RBP12.18□□□□□ -0.46
SS18-211ENST00000578954 TAGLN2P37802 199 aaKnown RBP12.18□□□□□ -0.46
SS18-211ENST00000578954 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.18□□□□□ -0.46
SS18-211ENST00000578954 TCF24Q7RTU0 167 aa12.18□□□□□ -0.46
SS18-211ENST00000578954 IQCF2Q8IXL9 164 aa12.18□□□□□ -0.46
SS18-211ENST00000578954 WFDC9Q8NEX5 89 aa12.18□□□□□ -0.46
SS18-211ENST00000578954 FAM210AQ96ND0 272 aa12.18□□□□□ -0.46
SS18-211ENST00000578954 NDUFB4O95168 129 aa12.17□□□□□ -0.46
SS18-211ENST00000578954 IFNA1P01562 189 aa12.17□□□□□ -0.46
SS18-211ENST00000578954 BCL2P10415 239 aa12.17□□□□□ -0.46
SS18-211ENST00000578954 DEFB114Q30KQ6 69 aa12.17□□□□□ -0.46
SS18-211ENST00000578954 NRN1Q9NPD7 142 aa12.17□□□□□ -0.46
SS18-211ENST00000578954 GNG13Q9P2W3 67 aa12.17□□□□□ -0.46
SS18-211ENST00000578954 TRAV25A0A0B4J276 109 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms