RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 IGHV1-46P01743 117 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 CGB3P0DN86 165 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 CGB7P0DN87 165 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 NTF3P20783 257 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 TCTAP57738 103 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 DSCR10P59022 87 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 HSPE1P61604 102 aaKnown RBP3.69□□□□□ -1.82
VPS53-219ENST00000576019 DEFB112Q30KQ8 113 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 CCDC153Q494R4 210 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 LCE1AQ5T7P2 110 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 FAM104BQ5XKR9 115 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 UNQ9165/PRO28630Q6UXU0 137 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 ADM2Q7Z4H4 148 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 STX19Q8N4C7 294 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 LINC00612Q8N6U2 182 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 PACRGLQ8N7B6 248 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 OR11H1Q8NG94 326 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 OR11H2Q8NH07 326 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 MS4A6EQ96DS6 147 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 CCL13Q99616 98 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 GINS3Q9BRX5 216 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 GABARAPL1Q9H0R8 117 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 LINC00574Q9H8X3 128 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 RSL24D1Q9UHA3 163 aaKnown RBP3.69□□□□□ -1.82
VPS53-219ENST00000576019 CELA1Q9UNI1 258 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 ARHGAP32A7KAX9 2087 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 LYNX1G3V0Z9 82 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 H0YGG7 62 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 GPR31O00270 319 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 CRYZL1O95825 349 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 DHFRP00374 187 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 TRGV3P03979 118 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 NBEAP1P0C6P0 100 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 LYNX1P0DP58 116 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 CRABP2P29373 138 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 DEFA3P59666 94 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 TNFAIP6P98066 277 aaPredicted RBP3.68□□□□□ -1.82
VPS53-219ENST00000576019 PLPPR5Q32ZL2 321 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 PRSS54Q6PEW0 395 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 PHF13Q86YI8 300 aaPredicted RBP3.68□□□□□ -1.82
VPS53-219ENST00000576019 SGPP2Q8IWX5 399 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 MKXQ8IYA7 352 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 RNF175Q8N4F7 328 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 RAB2BQ8WUD1 216 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 DYDC1Q8WWB3 177 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 C12orf43Q96C57 262 aaKnown RBP3.68□□□□□ -1.82
VPS53-219ENST00000576019 RNF5Q99942 180 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 DOHHQ9BU89 302 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 MIXL1Q9H2W2 232 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 PAIP2BQ9ULR5 123 aaKnown RBP3.68□□□□□ -1.82
VPS53-219ENST00000576019 PYCARDQ9ULZ3 195 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 SLC35A3Q9Y2D2 325 aa3.68□□□□□ -1.82
VPS53-219ENST00000576019 IGHV3OR15-7A0A075B7D8 119 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 IGHV1-69-2A0A0G2JMI3 117 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 LINC00862A6NCI5 91 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 A6NED7 52 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 COX7A2LO14548 114 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 HMGB3O15347 200 aaKnown RBP3.67□□□□□ -1.82
VPS53-219ENST00000576019 NDUFA2O43678 99 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 GYPCP04921 128 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 SERPINE1P05121 402 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 GUSBP08236 651 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 LINC00869P0C866 280 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 SULT1A3P0DMM9 295 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 SULT1A4P0DMN0 295 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 S100A1P23297 94 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 ZNF791Q3KP31 576 aaPredicted RBP3.67□□□□□ -1.82
VPS53-219ENST00000576019 Q5W150 140 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 LGALS9CQ6DKI2 356 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 GOLT1AQ6ZVE7 132 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 SSX8Q7RTT4 187 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 OR11H6Q8NGC7 330 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 OR10J5Q8NHC4 309 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 GNPDA2Q8TDQ7 276 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 PHLDA3Q9Y5J5 127 aa3.67□□□□□ -1.82
VPS53-219ENST00000576019 CHCHD2Q9Y6H1 151 aaPredicted RBP3.67□□□□□ -1.82
VPS53-219ENST00000576019 LRP1Q07954 4544 aaKnown RBP3.67□□□□□ -1.82
VPS53-219ENST00000576019 TRAPPC13A5PLN9 417 aa3.66□□□□□ -1.82
VPS53-219ENST00000576019 MFSD11O43934 449 aa3.66□□□□□ -1.82
VPS53-219ENST00000576019 IGHG2P01859 326 aa3.66□□□□□ -1.82
VPS53-219ENST00000576019 ZNF32P17041 273 aa3.66□□□□□ -1.82
VPS53-219ENST00000576019 ASIPP42127 132 aa3.66□□□□□ -1.82
VPS53-219ENST00000576019 GNG5P63218 68 aa3.66□□□□□ -1.82
VPS53-219ENST00000576019 ENDOGQ14249 297 aaKnown RBP3.66□□□□□ -1.82
VPS53-219ENST00000576019 NANOGP8Q6NSW7 305 aa3.66□□□□□ -1.82
VPS53-219ENST00000576019 GRINAQ7Z429 371 aa3.66□□□□□ -1.82
VPS53-219ENST00000576019 GDPD1Q8N9F7 314 aa3.66□□□□□ -1.82
VPS53-219ENST00000576019 ERMAPQ96PL5 475 aaPredicted RBP3.66□□□□□ -1.82
VPS53-219ENST00000576019 OR2D2Q9H210 308 aa3.66□□□□□ -1.82
VPS53-219ENST00000576019 GPR84Q9NQS5 396 aa3.66□□□□□ -1.82
VPS53-219ENST00000576019 PRTFDC1Q9NRG1 225 aa3.66□□□□□ -1.82
VPS53-219ENST00000576019 RFNGQ9Y644 331 aa3.66□□□□□ -1.82
VPS53-219ENST00000576019 SMAD5-AS1Q9Y6J3 95 aa3.66□□□□□ -1.82
VPS53-219ENST00000576019 KIF25-AS1Q9Y6Z4 181 aa3.66□□□□□ -1.82
VPS53-219ENST00000576019 IGKV3D-11A0A0A0MRZ8 115 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 A8MUN3 132 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 A8MWP4 228 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 LEUTXA8MZ59 168 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 IGLL5B9A064 214 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 LST1O00453 97 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms