RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 CTSGP08311 255 aa10.16□□□□□ -0.78
CLK3-218ENST00000566926 PSG1P11464 419 aa10.16□□□□□ -0.78
CLK3-218ENST00000566926 CBLN1P23435 193 aa10.16□□□□□ -0.78
CLK3-218ENST00000566926 TIGITQ495A1 244 aa10.16□□□□□ -0.78
CLK3-218ENST00000566926 C10orf113Q5VZT2 155 aa10.16□□□□□ -0.78
CLK3-218ENST00000566926 FAM122CQ6P4D5 195 aa10.16□□□□□ -0.78
CLK3-218ENST00000566926 UQCC3Q6UW78 93 aa10.16□□□□□ -0.78
CLK3-218ENST00000566926 ZNF600Q6ZNG1 722 aa10.16□□□□□ -0.78
CLK3-218ENST00000566926 EIF4E3Q8N5X7 224 aaKnown RBP10.16□□□□□ -0.78
CLK3-218ENST00000566926 RAB24Q969Q5 203 aa10.16□□□□□ -0.78
CLK3-218ENST00000566926 PBDC1Q9BVG4 233 aa10.16□□□□□ -0.78
CLK3-218ENST00000566926 SMDT1Q9H4I9 107 aa10.16□□□□□ -0.78
CLK3-218ENST00000566926 VSIRQ9H7M9 311 aa10.16□□□□□ -0.78
CLK3-218ENST00000566926 MRPL27Q9P0M9 148 aaKnown RBP10.16□□□□□ -0.78
CLK3-218ENST00000566926 FUT9Q9Y231 359 aa10.16□□□□□ -0.78
CLK3-218ENST00000566926 RFNGQ9Y644 331 aa10.16□□□□□ -0.78
CLK3-218ENST00000566926 NDUFA4O00483 81 aa10.15□□□□□ -0.78
CLK3-218ENST00000566926 IFNA1P01562 189 aa10.15□□□□□ -0.78
CLK3-218ENST00000566926 PSMB3P49720 205 aa10.15□□□□□ -0.78
CLK3-218ENST00000566926 DEFB114Q30KQ6 69 aa10.15□□□□□ -0.78
CLK3-218ENST00000566926 CD300EQ496F6 205 aaPredicted RBP10.15□□□□□ -0.78
CLK3-218ENST00000566926 KHDC3LQ587J8 217 aa10.15□□□□□ -0.78
CLK3-218ENST00000566926 FAM78BQ5VT40 261 aa10.15□□□□□ -0.78
CLK3-218ENST00000566926 PQLC2Q6ZP29 291 aa10.15□□□□□ -0.78
CLK3-218ENST00000566926 COMMD7Q86VX2 200 aa10.15□□□□□ -0.78
CLK3-218ENST00000566926 RNF125Q96EQ8 232 aa10.15□□□□□ -0.78
CLK3-218ENST00000566926 TMEM213A2RRL7 107 aa10.14□□□□□ -0.79
CLK3-218ENST00000566926 CXorf1O96002 111 aa10.14□□□□□ -0.79
CLK3-218ENST00000566926 STAG3L2P0CL84 134 aa10.14□□□□□ -0.79
CLK3-218ENST00000566926 STAG3L3P0CL85 134 aa10.14□□□□□ -0.79
CLK3-218ENST00000566926 ZNF726P1Q15940 193 aa10.14□□□□□ -0.79
CLK3-218ENST00000566926 ADAMTSL5Q6ZMM2 481 aa10.14□□□□□ -0.79
CLK3-218ENST00000566926 PCNPQ8WW12 178 aaKnown RBP10.14□□□□□ -0.79
CLK3-218ENST00000566926 TMEM190Q8WZ59 177 aa10.14□□□□□ -0.79
CLK3-218ENST00000566926 SLC25A22Q9H936 323 aa10.14□□□□□ -0.79
CLK3-218ENST00000566926 HIGD1AQ9Y241 93 aa10.14□□□□□ -0.79
CLK3-218ENST00000566926 IGHV3-35A0A0C4DH35 117 aa10.13□□□□□ -0.79
CLK3-218ENST00000566926 A8MZ25 164 aa10.13□□□□□ -0.79
CLK3-218ENST00000566926 K7EMT4 169 aa10.13□□□□□ -0.79
CLK3-218ENST00000566926 NDUFS6O75380 124 aaKnown RBP10.13□□□□□ -0.79
CLK3-218ENST00000566926 C8orf88P0DMB2 117 aa10.13□□□□□ -0.79
CLK3-218ENST00000566926 ORM2P19652 201 aa10.13□□□□□ -0.79
CLK3-218ENST00000566926 GATA2P23769 480 aaPredicted RBP10.13□□□□□ -0.79
CLK3-218ENST00000566926 ADMP35318 185 aa10.13□□□□□ -0.79
CLK3-218ENST00000566926 LYZP61626 148 aa10.13□□□□□ -0.79
CLK3-218ENST00000566926 TM4SF20Q53R12 229 aa10.13□□□□□ -0.79
CLK3-218ENST00000566926 GCSAMLQ5JQS6 135 aa10.13□□□□□ -0.79
CLK3-218ENST00000566926 LCN15Q6UWW0 184 aa10.13□□□□□ -0.79
CLK3-218ENST00000566926 UNQ9165/PRO28630Q6UXU0 137 aa10.13□□□□□ -0.79
CLK3-218ENST00000566926 Q8N1Y9 231 aa10.13□□□□□ -0.79
CLK3-218ENST00000566926 OR1B1Q8NGR6 318 aa10.13□□□□□ -0.79
CLK3-218ENST00000566926 TMEM37Q8WXS4 190 aa10.13□□□□□ -0.79
CLK3-218ENST00000566926 CHRDL1Q9BU40 450 aa10.13□□□□□ -0.79
CLK3-218ENST00000566926 SEPSECSQ9HD40 501 aaKnown RBP10.13□□□□□ -0.79
CLK3-218ENST00000566926 MANBALQ9NQG1 85 aa10.13□□□□□ -0.79
CLK3-218ENST00000566926 DAZ1Q9NQZ3 744 aaKnown RBP10.13□□□□□ -0.79
CLK3-218ENST00000566926 ARL2-SNX15V9GYD0 113 aa10.13□□□□□ -0.79
CLK3-218ENST00000566926 COL7A1Q02388 2944 aa10.12□□□□□ -0.79
CLK3-218ENST00000566926 TRAV25A0A0B4J276 109 aa10.12□□□□□ -0.79
CLK3-218ENST00000566926 IZUMO1RA6ND01 250 aa10.12□□□□□ -0.79
CLK3-218ENST00000566926 IL4P05112 153 aa10.12□□□□□ -0.79
CLK3-218ENST00000566926 FRMD6-AS1P0C7T7 363 aa10.12□□□□□ -0.79
CLK3-218ENST00000566926 GUCA2BQ16661 112 aa10.12□□□□□ -0.79
CLK3-218ENST00000566926 LINC00305Q7Z4B0 112 aa10.12□□□□□ -0.79
CLK3-218ENST00000566926 FAM210AQ96ND0 272 aa10.12□□□□□ -0.79
CLK3-218ENST00000566926 TXNDC17Q9BRA2 123 aa10.12□□□□□ -0.79
CLK3-218ENST00000566926 C20orf24Q9BUV8 137 aa10.12□□□□□ -0.79
CLK3-218ENST00000566926 TMEM167BQ9NRX6 74 aa10.12□□□□□ -0.79
CLK3-218ENST00000566926 PUS1Q9Y606 427 aaKnown RBP eCLIP10.12□□□□□ -0.79
CLK3-218ENST00000566926 ZNF785A8K8V0 405 aa10.11□□□□□ -0.79
CLK3-218ENST00000566926 IGHV4-30-4P0DP06 118 aa10.11□□□□□ -0.79
CLK3-218ENST00000566926 PEA15Q15121 130 aa10.11□□□□□ -0.79
CLK3-218ENST00000566926 RBPMS2Q6ZRY4 209 aaKnown RBP10.11□□□□□ -0.79
CLK3-218ENST00000566926 SUN5Q8TC36 379 aa10.11□□□□□ -0.79
CLK3-218ENST00000566926 TUBA4BQ9H853 241 aa10.11□□□□□ -0.79
CLK3-218ENST00000566926 DOK5Q9P104 306 aa10.11□□□□□ -0.79
CLK3-218ENST00000566926 MLXQ9UH92 298 aa10.11□□□□□ -0.79
CLK3-218ENST00000566926 RABAC1Q9UI14 185 aa10.11□□□□□ -0.79
CLK3-218ENST00000566926 ARL14EPLP0DKL9 152 aa10.1□□□□□ -0.79
CLK3-218ENST00000566926 BMI1P35226 326 aa10.1□□□□□ -0.79
CLK3-218ENST00000566926 CD81P60033 236 aa10.1□□□□□ -0.79
CLK3-218ENST00000566926 PATE2Q6UY27 113 aa10.1□□□□□ -0.79
CLK3-218ENST00000566926 ASCL2Q99929 193 aa10.1□□□□□ -0.79
CLK3-218ENST00000566926 SHANK2-AS3Q9BTD1 123 aa10.1□□□□□ -0.79
CLK3-218ENST00000566926 SLC25A39Q9BZJ4 359 aaPredicted RBP10.1□□□□□ -0.79
CLK3-218ENST00000566926 ZMAT4Q9H898 229 aa10.1□□□□□ -0.79
CLK3-218ENST00000566926 C19orf73Q9NVV2 129 aa10.1□□□□□ -0.79
CLK3-218ENST00000566926 U3KQK5 164 aa10.1□□□□□ -0.79
CLK3-218ENST00000566926 RBFOX3A6NFN3 312 aa10.09□□□□□ -0.79
CLK3-218ENST00000566926 OR7C2O60412 319 aa10.09□□□□□ -0.79
CLK3-218ENST00000566926 BCL2P10415 239 aa10.09□□□□□ -0.79
CLK3-218ENST00000566926 EDN2P20800 178 aa10.09□□□□□ -0.79
CLK3-218ENST00000566926 GUK1Q16774 197 aa10.09□□□□□ -0.79
CLK3-218ENST00000566926 TOMM20LQ6UXN7 152 aa10.09□□□□□ -0.79
CLK3-218ENST00000566926 MIR17HGQ75NE6 70 aa10.09□□□□□ -0.79
CLK3-218ENST00000566926 SSX7Q7RTT5 188 aa10.09□□□□□ -0.79
CLK3-218ENST00000566926 SBSPONQ8IVN8 264 aa10.09□□□□□ -0.79
CLK3-218ENST00000566926 SLC7A5P1Q8MH63 180 aa10.09□□□□□ -0.79
CLK3-218ENST00000566926 TMEM61Q8N0U2 210 aa10.09□□□□□ -0.79
CLK3-218ENST00000566926 NARS2Q96I59 477 aaKnown RBP10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms