RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 MEF2DQ14814 521 aa5□□□□□ -1.61
VPS4A-203ENST00000564399 AARDQ4LEZ3 155 aa5□□□□□ -1.61
VPS4A-203ENST00000564399 RNASE10Q5GAN6 216 aaKnown RBP5□□□□□ -1.61
VPS4A-203ENST00000564399 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5□□□□□ -1.61
VPS4A-203ENST00000564399 CROCCP3Q8IVE0 287 aa5□□□□□ -1.61
VPS4A-203ENST00000564399 CCDC28AQ8IWP9 274 aa5□□□□□ -1.61
VPS4A-203ENST00000564399 LGI3Q8N145 548 aa5□□□□□ -1.61
VPS4A-203ENST00000564399 ZFAND1Q8TCF1 268 aa5□□□□□ -1.61
VPS4A-203ENST00000564399 RNASE8Q8TDE3 154 aaKnown RBP5□□□□□ -1.61
VPS4A-203ENST00000564399 PLA2G2DQ9UNK4 145 aa5□□□□□ -1.61
VPS4A-203ENST00000564399 U3KQ87 197 aa5□□□□□ -1.61
VPS4A-203ENST00000564399 TRAV9-2A0A087WT02 112 aa4.99□□□□□ -1.61
VPS4A-203ENST00000564399 A0A096LPF7 62 aa4.99□□□□□ -1.61
VPS4A-203ENST00000564399 TEX13DA0A0J9YY54 714 aaPredicted RBP4.99□□□□□ -1.61
VPS4A-203ENST00000564399 SNURFLB1AK76 121 aa4.99□□□□□ -1.61
VPS4A-203ENST00000564399 H7BYZ3 331 aa4.99□□□□□ -1.61
VPS4A-203ENST00000564399 B3GALNT1O75752 331 aa4.99□□□□□ -1.61
VPS4A-203ENST00000564399 TNFAIP8O95379 198 aa4.99□□□□□ -1.61
VPS4A-203ENST00000564399 CDS2O95674 445 aa4.99□□□□□ -1.61
VPS4A-203ENST00000564399 OR5AC1P0C628 307 aa4.99□□□□□ -1.61
VPS4A-203ENST00000564399 TMEM268Q5VZI3 342 aa4.99□□□□□ -1.61
VPS4A-203ENST00000564399 TMED4Q7Z7H5 227 aa4.99□□□□□ -1.61
VPS4A-203ENST00000564399 LHFPL1Q86WI0 220 aa4.99□□□□□ -1.61
VPS4A-203ENST00000564399 SELENOHQ8IZQ5 122 aaKnown RBP4.99□□□□□ -1.61
VPS4A-203ENST00000564399 LINC00612Q8N6U2 182 aa4.99□□□□□ -1.61
VPS4A-203ENST00000564399 OR1B1Q8NGR6 318 aa4.99□□□□□ -1.61
VPS4A-203ENST00000564399 LHFPL5Q8TAF8 219 aa4.99□□□□□ -1.61
VPS4A-203ENST00000564399 RBPMSQ93062 196 aaKnown RBP4.99□□□□□ -1.61
VPS4A-203ENST00000564399 TMEM70Q9BUB7 260 aa4.99□□□□□ -1.61
VPS4A-203ENST00000564399 TMEM222Q9H0R3 208 aa4.99□□□□□ -1.61
VPS4A-203ENST00000564399 TMPRSS5Q9H3S3 457 aa4.99□□□□□ -1.61
VPS4A-203ENST00000564399 IGLV5-52A0A0A0MRZ9 124 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 TRAV8-2A0A0B4J237 113 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 NPIPB6E9PJ23 425 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 SULT1A3P0DMM9 295 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 SULT1A4P0DMN0 295 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 PRB4P10163 310 aaPredicted RBP4.98□□□□□ -1.61
VPS4A-203ENST00000564399 ORM2P19652 201 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 S100A7P31151 101 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 TGFBR1P36897 503 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 GPX4P36969 197 aaPredicted RBP4.98□□□□□ -1.61
VPS4A-203ENST00000564399 CDKN1BP46527 198 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 SCGB2B2Q4G0G5 96 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 LCE2AQ5TA79 106 aaPredicted RBP4.98□□□□□ -1.61
VPS4A-203ENST00000564399 GGNBP1Q5YKI7 109 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 IZUMO2Q6UXV1 221 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 OR8A1Q8NGG7 326 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 OR4D5Q8NGN0 318 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 OR13C8Q8NGS7 320 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 TERB2Q8NHR7 220 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 LRRC20Q8TCA0 184 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 MARCH1Q8TCQ1 289 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 DTD1Q8TEA8 209 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 DEFB104AQ8WTQ1 72 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 GLYATL2Q8WU03 294 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 VSIG2Q96IQ7 327 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 GPR82Q96P67 336 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 TRGV9Q99603 122 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 VCX3BQ9H321 246 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 MSRB1Q9NZV6 116 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 COMMD3Q9UBI1 195 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 CACFD1Q9UGQ2 172 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 PAIP2BQ9ULR5 123 aaKnown RBP4.98□□□□□ -1.61
VPS4A-203ENST00000564399 C14orf166Q9Y224 244 aaKnown RBP4.98□□□□□ -1.61
VPS4A-203ENST00000564399 HMCN2Q8NDA2 5059 aa4.98□□□□□ -1.61
VPS4A-203ENST00000564399 TRGV2A0A075B6R0 118 aa4.97□□□□□ -1.61
VPS4A-203ENST00000564399 CFDP00746 253 aaPredicted RBP4.97□□□□□ -1.61
VPS4A-203ENST00000564399 CD3DP04234 171 aa4.97□□□□□ -1.61
VPS4A-203ENST00000564399 RPS19P39019 145 aaKnown RBP4.97□□□□□ -1.61
VPS4A-203ENST00000564399 Q6ZTI0 123 aa4.97□□□□□ -1.61
VPS4A-203ENST00000564399 BPIFCQ8NFQ6 507 aa4.97□□□□□ -1.61
VPS4A-203ENST00000564399 TMEM147Q9BVK8 224 aa4.97□□□□□ -1.61
VPS4A-203ENST00000564399 RBKSQ9H477 322 aa4.97□□□□□ -1.61
VPS4A-203ENST00000564399 SLC45A2Q9UMX9 530 aa4.97□□□□□ -1.61
VPS4A-203ENST00000564399 ICOSQ9Y6W8 199 aa4.97□□□□□ -1.61
VPS4A-203ENST00000564399 LY96Q9Y6Y9 160 aa4.97□□□□□ -1.61
VPS4A-203ENST00000564399 IGKV1OR2-108A0A075B7D4 117 aa4.96□□□□□ -1.62
VPS4A-203ENST00000564399 PAX4O43316 350 aa4.96□□□□□ -1.62
VPS4A-203ENST00000564399 PSCAO43653 123 aa4.96□□□□□ -1.62
VPS4A-203ENST00000564399 APOA1P02647 267 aa4.96□□□□□ -1.62
VPS4A-203ENST00000564399 CXCL3P19876 107 aa4.96□□□□□ -1.62
VPS4A-203ENST00000564399 GATA2P23769 480 aaPredicted RBP4.96□□□□□ -1.62
VPS4A-203ENST00000564399 ATP5IP56385 69 aaPredicted RBP4.96□□□□□ -1.62
VPS4A-203ENST00000564399 LSM3P62310 102 aaKnown RBP4.96□□□□□ -1.62
VPS4A-203ENST00000564399 RAB11AP62491 216 aa4.96□□□□□ -1.62
VPS4A-203ENST00000564399 KIR3DS1Q14943 382 aa4.96□□□□□ -1.62
VPS4A-203ENST00000564399 NEDD8Q15843 81 aa4.96□□□□□ -1.62
VPS4A-203ENST00000564399 PSG3Q16557 428 aa4.96□□□□□ -1.62
VPS4A-203ENST00000564399 CCDC190Q86UF4 302 aa4.96□□□□□ -1.62
VPS4A-203ENST00000564399 RPUSD4Q96CM3 377 aaKnown RBP4.96□□□□□ -1.62
VPS4A-203ENST00000564399 C20orf144Q9BQM9 153 aa4.96□□□□□ -1.62
VPS4A-203ENST00000564399 NAA60Q9H7X0 242 aa4.96□□□□□ -1.62
VPS4A-203ENST00000564399 TMEM56-RWDD3S4R434 201 aa4.96□□□□□ -1.62
VPS4A-203ENST00000564399 ANKRD65E5RJM6 399 aa4.95□□□□□ -1.62
VPS4A-203ENST00000564399 J3KRW8 73 aa4.95□□□□□ -1.62
VPS4A-203ENST00000564399 RAB3DO95716 219 aa4.95□□□□□ -1.62
VPS4A-203ENST00000564399 RPL7P18124 248 aaKnown RBP4.95□□□□□ -1.62
VPS4A-203ENST00000564399 TBPP20226 339 aa4.95□□□□□ -1.62
VPS4A-203ENST00000564399 EVI2AP22794 236 aa4.95□□□□□ -1.62
VPS4A-203ENST00000564399 CCR6P51684 374 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms