RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 SPATA12Q7Z6I5 190 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 WDR86Q86TI4 376 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 WFDC11Q8NEX6 87 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 CCL17Q92583 94 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 C4orf45Q96LM5 186 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 C2orf50Q96LR7 162 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 C11orf68Q9H3H3 251 aaKnown RBP3.9□□□□□ -1.79
VPS35-205ENST00000563984 ZNF256Q9Y2P7 627 aaPredicted RBP3.9□□□□□ -1.79
VPS35-205ENST00000563984 HLA-DRB4X5D2U9 266 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 ARID2Q68CP9 1835 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 KMT2EQ8IZD2 1858 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 NEXMIFQ5QGS0 1516 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 CRYBG1Q9Y4K1 1723 aa3.9□□□□□ -1.79
VPS35-205ENST00000563984 CICQ96RK0 1608 aaPredicted RBP3.89□□□□□ -1.79
VPS35-205ENST00000563984 TRGV5A0A0B4J1U4 118 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 PGPA6NDG6 321 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 SYNGR2O43760 224 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 WISP2O76076 250 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 NGFP01138 241 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 SRP19P09132 144 aaKnown RBP3.89□□□□□ -1.79
VPS35-205ENST00000563984 IGLL1P15814 213 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 LGALS3P17931 250 aaKnown RBP3.89□□□□□ -1.79
VPS35-205ENST00000563984 GNB2P62879 340 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 CACNG7P62955 275 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 TMEM187Q14656 261 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 ABCA11PQ4W5N1 156 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 CLEC19AQ6UXS0 136 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 SH2D6Q7Z4S9 175 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 TEN1Q86WV5 123 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 AMN1Q8IY45 258 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 OR10G2Q8NGC3 310 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 OR8B3Q8NGG8 313 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 MYOZ3Q8TDC0 251 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 PHLDA1Q8WV24 401 aaPredicted RBP3.89□□□□□ -1.79
VPS35-205ENST00000563984 GTSF1Q8WW33 167 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 ZNF799Q96GE5 643 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 SPACA5Q96QH8 159 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 ESM1Q9NQ30 184 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 CYTL1Q9NRR1 136 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 DEPPQ9NTK1 212 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 TRAPPC1Q9Y5R8 145 aa3.89□□□□□ -1.79
VPS35-205ENST00000563984 C5P01031 1676 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 A0A087WZ39 114 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 ATOX1O00244 68 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 NTN3O00634 580 aaPredicted RBP3.88□□□□□ -1.79
VPS35-205ENST00000563984 SRSF10O75494 262 aaKnown RBP3.88□□□□□ -1.79
VPS35-205ENST00000563984 IGHV3-7P01780 117 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 CRISP2P16562 243 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 ELK1P19419 428 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 MPV17P39210 176 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 PSMG4Q5JS54 123 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 TIFABQ6ZNK6 161 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 Q6ZS49 121 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 RFLNAQ6ZTI6 216 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 Q6ZVQ6 151 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 BAGE3Q86Y29 109 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 BAGE2Q86Y30 109 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 TMEM256Q8N2U0 113 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 CYB561D1Q8N8Q1 229 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 SMIM4Q8WVI0 70 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 SLC25A38Q96DW6 304 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 MGST2Q99735 147 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 OVOL2Q9BRP0 275 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 C16orf95Q9H693 158 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 PRO0461Q9UI25 63 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 LINC00527Q9UJ94 153 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 F11RQ9Y624 299 aaKnown RBP3.88□□□□□ -1.79
VPS35-205ENST00000563984 KCNE3Q9Y6H6 103 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 ATAD5Q96QE3 1844 aa3.88□□□□□ -1.79
VPS35-205ENST00000563984 TICRRQ7Z2Z1 1910 aa3.87□□□□□ -1.79
VPS35-205ENST00000563984 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.87□□□□□ -1.79
VPS35-205ENST00000563984 BTAF1O14981 1849 aa3.87□□□□□ -1.79
VPS35-205ENST00000563984 ZNF646O15015 1829 aaPredicted RBP3.87□□□□□ -1.79
VPS35-205ENST00000563984 TRAV8-3A0A0A6YYJ7 113 aa3.87□□□□□ -1.79
VPS35-205ENST00000563984 E9PLD3 99 aa3.87□□□□□ -1.79
VPS35-205ENST00000563984 SDCBPO00560 298 aaPredicted RBP3.87□□□□□ -1.79
VPS35-205ENST00000563984 OR1I1O60431 355 aa3.87□□□□□ -1.79
VPS35-205ENST00000563984 ZNF324O75467 553 aaPredicted RBP3.87□□□□□ -1.79
VPS35-205ENST00000563984 IGKCP01834 107 aa3.87□□□□□ -1.79
VPS35-205ENST00000563984 C3orf79P0CE67 100 aa3.87□□□□□ -1.79
VPS35-205ENST00000563984 RBMY1CP0DJD4 496 aa3.87□□□□□ -1.79
VPS35-205ENST00000563984 CRIP2P52943 208 aaPredicted RBP3.87□□□□□ -1.79
VPS35-205ENST00000563984 KRTAP10-12P60413 245 aa3.87□□□□□ -1.79
VPS35-205ENST00000563984 SRSF9Q13242 221 aaKnown RBP eCLIP3.87□□□□□ -1.79
VPS35-205ENST00000563984 C3orf56Q8N813 242 aa3.87□□□□□ -1.79
VPS35-205ENST00000563984 STAG3L4Q8TBR4 150 aa3.87□□□□□ -1.79
VPS35-205ENST00000563984 LRRC29Q8WV35 223 aa3.87□□□□□ -1.79
VPS35-205ENST00000563984 GEMIN6Q8WXD5 167 aaKnown RBP3.87□□□□□ -1.79
VPS35-205ENST00000563984 AQP3Q92482 292 aa3.87□□□□□ -1.79
VPS35-205ENST00000563984 LSM10Q969L4 123 aaKnown RBP3.87□□□□□ -1.79
VPS35-205ENST00000563984 CHCHD5Q9BSY4 110 aa3.87□□□□□ -1.79
VPS35-205ENST00000563984 SCRT2Q9NQ03 307 aa3.87□□□□□ -1.79
VPS35-205ENST00000563984 KLK5Q9Y337 293 aaPredicted RBP3.87□□□□□ -1.79
VPS35-205ENST00000563984 ADGRB2O60241 1585 aa3.87□□□□□ -1.79
VPS35-205ENST00000563984 QSER1Q2KHR3 1735 aa3.87□□□□□ -1.79
VPS35-205ENST00000563984 TSC2P49815 1807 aa3.86□□□□□ -1.79
VPS35-205ENST00000563984 NLRC5Q86WI3 1866 aa3.86□□□□□ -1.79
VPS35-205ENST00000563984 ZNHIT1O43257 154 aa3.86□□□□□ -1.79
VPS35-205ENST00000563984 PRSS1P07477 247 aa3.86□□□□□ -1.79
VPS35-205ENST00000563984 CD7P09564 240 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms