RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 PFDN2Q9UHV9 154 aa12.53□□□□□ -0.4
VPS4A-202ENST00000562754 MRPS12O15235 138 aaKnown RBP12.52□□□□□ -0.41
VPS4A-202ENST00000562754 IGLL1P15814 213 aa12.52□□□□□ -0.41
VPS4A-202ENST00000562754 BMI1P35226 326 aa12.52□□□□□ -0.41
VPS4A-202ENST00000562754 DEFB114Q30KQ6 69 aa12.52□□□□□ -0.41
VPS4A-202ENST00000562754 S100A7AQ86SG5 101 aa12.52□□□□□ -0.41
VPS4A-202ENST00000562754 FAM213BQ8TBF2 198 aa12.52□□□□□ -0.41
VPS4A-202ENST00000562754 RAB24Q969Q5 203 aa12.52□□□□□ -0.41
VPS4A-202ENST00000562754 GRAMD2BQ96HH9 432 aa12.52□□□□□ -0.41
VPS4A-202ENST00000562754 ACTR3CQ9C0K3 210 aaPredicted RBP12.52□□□□□ -0.41
VPS4A-202ENST00000562754 A0A1W2PPV4 95 aa12.51□□□□□ -0.41
VPS4A-202ENST00000562754 HMGB3O15347 200 aaKnown RBP12.51□□□□□ -0.41
VPS4A-202ENST00000562754 GP9P14770 177 aa12.51□□□□□ -0.41
VPS4A-202ENST00000562754 S100A7P31151 101 aa12.51□□□□□ -0.41
VPS4A-202ENST00000562754 PRR31Q5SQ13 230 aa12.51□□□□□ -0.41
VPS4A-202ENST00000562754 FAM90A2PQ658T7 463 aa12.51□□□□□ -0.41
VPS4A-202ENST00000562754 TEX261Q6UWH6 196 aa12.51□□□□□ -0.41
VPS4A-202ENST00000562754 TCF24Q7RTU0 167 aa12.51□□□□□ -0.41
VPS4A-202ENST00000562754 OR8I2Q8N0Y5 310 aa12.51□□□□□ -0.41
VPS4A-202ENST00000562754 ZNF503Q96F45 646 aa12.51□□□□□ -0.41
VPS4A-202ENST00000562754 CTXND1A0A1B0GTU2 59 aa12.5□□□□□ -0.41
VPS4A-202ENST00000562754 IGLV1-51P01701 117 aa12.5□□□□□ -0.41
VPS4A-202ENST00000562754 RAB5CP51148 216 aa12.5□□□□□ -0.41
VPS4A-202ENST00000562754 CD300EQ496F6 205 aaPredicted RBP12.5□□□□□ -0.41
VPS4A-202ENST00000562754 C9orf66Q5T8R8 295 aa12.5□□□□□ -0.41
VPS4A-202ENST00000562754 DPPA3Q6W0C5 159 aa12.5□□□□□ -0.41
VPS4A-202ENST00000562754 SIGLEC15Q6ZMC9 328 aa12.5□□□□□ -0.41
VPS4A-202ENST00000562754 TMEM61Q8N0U2 210 aa12.5□□□□□ -0.41
VPS4A-202ENST00000562754 ZNF680Q8NEM1 530 aa12.5□□□□□ -0.41
VPS4A-202ENST00000562754 C17orf77Q96MU5 243 aa12.5□□□□□ -0.41
VPS4A-202ENST00000562754 MCRIP2Q9BUT9 160 aaKnown RBP12.5□□□□□ -0.41
VPS4A-202ENST00000562754 SMAD5-AS1Q9Y6J3 95 aa12.5□□□□□ -0.41
VPS4A-202ENST00000562754 IZUMO1RA6ND01 250 aa12.49□□□□□ -0.41
VPS4A-202ENST00000562754 STAG3L2P0CL84 134 aa12.49□□□□□ -0.41
VPS4A-202ENST00000562754 STAG3L3P0CL85 134 aa12.49□□□□□ -0.41
VPS4A-202ENST00000562754 PYYP10082 97 aa12.49□□□□□ -0.41
VPS4A-202ENST00000562754 RPL7P18124 248 aaKnown RBP12.49□□□□□ -0.41
VPS4A-202ENST00000562754 IFITM2Q01629 132 aa12.49□□□□□ -0.41
VPS4A-202ENST00000562754 KHDC3LQ587J8 217 aa12.49□□□□□ -0.41
VPS4A-202ENST00000562754 GPR82Q96P67 336 aa12.49□□□□□ -0.41
VPS4A-202ENST00000562754 CMYA5Q8N3K9 4069 aa12.48□□□□□ -0.41
VPS4A-202ENST00000562754 MAP1LC3B2A6NCE7 125 aa12.48□□□□□ -0.41
VPS4A-202ENST00000562754 HELTA6NFD8 242 aa12.48□□□□□ -0.41
VPS4A-202ENST00000562754 OR7C2O60412 319 aa12.48□□□□□ -0.41
VPS4A-202ENST00000562754 ARL14EPLP0DKL9 152 aa12.48□□□□□ -0.41
VPS4A-202ENST00000562754 TAS2R45P59539 299 aa12.48□□□□□ -0.41
VPS4A-202ENST00000562754 LCN15Q6UWW0 184 aa12.48□□□□□ -0.41
VPS4A-202ENST00000562754 BPIFA4PQ86YQ2 179 aa12.48□□□□□ -0.41
VPS4A-202ENST00000562754 MAP1LC3BQ9GZQ8 125 aa12.48□□□□□ -0.41
VPS4A-202ENST00000562754 TMEM14CQ9P0S9 112 aa12.48□□□□□ -0.41
VPS4A-202ENST00000562754 RNF24Q9Y225 148 aa12.48□□□□□ -0.41
VPS4A-202ENST00000562754 IGKV3-7A0A075B6H7 116 aa12.47□□□□□ -0.41
VPS4A-202ENST00000562754 H3BQ15 152 aa12.47□□□□□ -0.41
VPS4A-202ENST00000562754 WIPF1O43516 503 aa12.47□□□□□ -0.41
VPS4A-202ENST00000562754 SNRPCP09234 159 aaKnown RBP12.47□□□□□ -0.41
VPS4A-202ENST00000562754 IGLC2P0DOY2 106 aa12.47□□□□□ -0.41
VPS4A-202ENST00000562754 GALR1P47211 349 aa12.47□□□□□ -0.41
VPS4A-202ENST00000562754 INSL3P51460 131 aa12.47□□□□□ -0.41
VPS4A-202ENST00000562754 FGF8P55075 233 aaPredicted RBP12.47□□□□□ -0.41
VPS4A-202ENST00000562754 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.47□□□□□ -0.41
VPS4A-202ENST00000562754 MBD3L1Q8WWY6 194 aa12.47□□□□□ -0.41
VPS4A-202ENST00000562754 PAXXQ9BUH6 204 aa12.47□□□□□ -0.41
VPS4A-202ENST00000562754 OR51M1Q9H341 326 aa12.47□□□□□ -0.41
VPS4A-202ENST00000562754 A0A087X0K7 114 aa12.46□□□□□ -0.41
VPS4A-202ENST00000562754 ZNF705EA8MWA4 302 aaPredicted RBP12.46□□□□□ -0.41
VPS4A-202ENST00000562754 H3BTX0 84 aa12.46□□□□□ -0.41
VPS4A-202ENST00000562754 IFNA7P01567 189 aa12.46□□□□□ -0.41
VPS4A-202ENST00000562754 OR10J4P0C629 311 aa12.46□□□□□ -0.41
VPS4A-202ENST00000562754 ATF4P18848 351 aaPredicted RBP12.46□□□□□ -0.41
VPS4A-202ENST00000562754 UBE2L3P68036 154 aaKnown RBP12.46□□□□□ -0.41
VPS4A-202ENST00000562754 PQLC2Q6ZP29 291 aa12.46□□□□□ -0.41
VPS4A-202ENST00000562754 STXBP6Q8NFX7 210 aa12.46□□□□□ -0.41
VPS4A-202ENST00000562754 OR2K2Q8NGT1 345 aa12.46□□□□□ -0.41
VPS4A-202ENST00000562754 RNF141Q8WVD5 230 aa12.46□□□□□ -0.41
VPS4A-202ENST00000562754 FXYD5Q96DB9 178 aa12.46□□□□□ -0.41
VPS4A-202ENST00000562754 ZNF586Q9NXT0 402 aa12.46□□□□□ -0.41
VPS4A-202ENST00000562754 PKD1L1Q8TDX9 2849 aa12.46□□□□□ -0.42
VPS4A-202ENST00000562754 TRAV25A0A0B4J276 109 aa12.45□□□□□ -0.42
VPS4A-202ENST00000562754 TSPAN4O14817 238 aa12.45□□□□□ -0.42
VPS4A-202ENST00000562754 CD5P06127 495 aa12.45□□□□□ -0.42
VPS4A-202ENST00000562754 H2AFB1P0C5Y9 115 aa12.45□□□□□ -0.42
VPS4A-202ENST00000562754 GCHFRP30047 84 aa12.45□□□□□ -0.42
VPS4A-202ENST00000562754 RPL11P62913 178 aaKnown RBP12.45□□□□□ -0.42
VPS4A-202ENST00000562754 OXLD1Q5BKU9 147 aa12.45□□□□□ -0.42
VPS4A-202ENST00000562754 GBGT1Q8N5D6 347 aa12.45□□□□□ -0.42
VPS4A-202ENST00000562754 MS4A6AQ9H2W1 248 aa12.45□□□□□ -0.42
VPS4A-202ENST00000562754 UBQLN2Q9UHD9 624 aa12.45□□□□□ -0.42
VPS4A-202ENST00000562754 A0A1B0GV50 99 aa12.44□□□□□ -0.42
VPS4A-202ENST00000562754 ZNF785A8K8V0 405 aa12.44□□□□□ -0.42
VPS4A-202ENST00000562754 SLC17A3O00476 420 aa12.44□□□□□ -0.42
VPS4A-202ENST00000562754 SOCS3O14543 225 aa12.44□□□□□ -0.42
VPS4A-202ENST00000562754 CXorf1O96002 111 aa12.44□□□□□ -0.42
VPS4A-202ENST00000562754 HIST1H1EP10412 219 aaKnown RBP12.44□□□□□ -0.42
VPS4A-202ENST00000562754 TFPI2P48307 235 aa12.44□□□□□ -0.42
VPS4A-202ENST00000562754 LCN12Q6JVE5 192 aa12.44□□□□□ -0.42
VPS4A-202ENST00000562754 RBPMS2Q6ZRY4 209 aaKnown RBP12.44□□□□□ -0.42
VPS4A-202ENST00000562754 SFT2D1Q8WV19 159 aa12.44□□□□□ -0.42
VPS4A-202ENST00000562754 PCNPQ8WW12 178 aaKnown RBP12.44□□□□□ -0.42
VPS4A-202ENST00000562754 HRH4Q9H3N8 390 aa12.44□□□□□ -0.42
VPS4A-202ENST00000562754 TMPRSS5Q9H3S3 457 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms