RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PRB3Q04118 309 aaPredicted RBP5.88□□□□□ -1.47
VPS39-204ENST00000561818 FOXE3Q13461 319 aa5.88□□□□□ -1.47
VPS39-204ENST00000561818 CIARTQ8N365 385 aaPredicted RBP5.88□□□□□ -1.47
VPS39-204ENST00000561818 OR5T1Q8NG75 326 aa5.88□□□□□ -1.47
VPS39-204ENST00000561818 HSPB9Q9BQS6 159 aa5.88□□□□□ -1.47
VPS39-204ENST00000561818 MRPL36Q9P0J6 103 aaKnown RBP5.88□□□□□ -1.47
VPS39-204ENST00000561818 LENEPQ9Y5L5 61 aa5.88□□□□□ -1.47
VPS39-204ENST00000561818 CREBBPQ92793 2442 aa5.88□□□□□ -1.47
VPS39-204ENST00000561818 AKAP6Q13023 2319 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.87□□□□□ -1.47
VPS39-204ENST00000561818 A0A1W2PPQ1 181 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 OR2T8A6NH00 312 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 K7EMT4 169 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 UBE2CO00762 179 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 LTAP01374 205 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 IGHG4P01861 327 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 HLA-DQA1P01909 254 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 CLEC3BP05452 202 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 PYYP10082 97 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 GPR183P32249 361 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 IER3P46695 156 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 TPPP2P59282 170 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 RPS20P60866 119 aaKnown RBP5.87□□□□□ -1.47
VPS39-204ENST00000561818 SRSF1Q07955 248 aaKnown RBP eCLIP5.87□□□□□ -1.47
VPS39-204ENST00000561818 KIAA0141Q14154 515 aaPredicted RBP5.87□□□□□ -1.47
VPS39-204ENST00000561818 USF2Q15853 346 aaPredicted RBP5.87□□□□□ -1.47
VPS39-204ENST00000561818 FAM106AQ4KMX7 169 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 FAM120AOSQ5T036 256 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 RUSC1-AS1Q66K80 236 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 BRD3OSQ6XYD6 125 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 Q6YL49 198 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 TMEM183AQ8IXX5 376 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 OCC1Q8TAD7 63 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 PIFOQ8TCI5 191 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 BORCS7Q96B45 105 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 IGF2BP2-AS1Q96M15 143 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 PSMG3-AS1Q96PY0 264 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 TMEM160Q9NX00 188 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 NAT8BQ9UHF3 227 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 URGCP-MRPS24S4R325 110 aa5.87□□□□□ -1.47
VPS39-204ENST00000561818 TRBV20OR9-2A0A075B6H5 130 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 TRBV7-9A0A0J9YWB2 115 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 ZNF705GA8MUZ8 300 aaPredicted RBP5.86□□□□□ -1.47
VPS39-204ENST00000561818 F8W735 103 aaPredicted RBP5.86□□□□□ -1.47
VPS39-204ENST00000561818 GATCO43716 136 aaKnown RBP5.86□□□□□ -1.47
VPS39-204ENST00000561818 IGLV1-40P01703 118 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 P01737 135 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 IGHV3-48P01763 117 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 MGST1P10620 155 aaKnown RBP5.86□□□□□ -1.47
VPS39-204ENST00000561818 S100A2P29034 98 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 PPIFP30405 207 aaKnown RBP5.86□□□□□ -1.47
VPS39-204ENST00000561818 ARL3P36405 182 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 SRSF2Q01130 221 aaKnown RBP5.86□□□□□ -1.47
VPS39-204ENST00000561818 KLF17Q5JT82 389 aaPredicted RBP5.86□□□□□ -1.47
VPS39-204ENST00000561818 SIGLEC15Q6ZMC9 328 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 COX8CQ7Z4L0 72 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 TSKUQ8WUA8 353 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 BLNKQ8WV28 456 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 ZNF414Q96IQ9 312 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 Q96MF0 132 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 DERL1Q9BUN8 251 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 GNB1LQ9BYB4 327 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 GNB4Q9HAV0 340 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 UFC1Q9Y3C8 167 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 NAV2Q8IVL1 2488 aa5.86□□□□□ -1.47
VPS39-204ENST00000561818 PRRC2AP48634 2157 aaKnown RBP5.86□□□□□ -1.47
VPS39-204ENST00000561818 FLNCQ14315 2725 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 ZFYVE26Q68DK2 2539 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 COL12A1Q99715 3063 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 IGHV3-21A0A0B4J1V1 117 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 TRAV5A0A0B4J249 113 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 SMIM27A0A1W2PRY6 76 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 C5orf52A6NGY3 159 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 BUB3O43684 328 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 AMY1AP04745 511 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 SMIM6P0DI80 62 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 PSG3Q16557 428 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 COA6Q5JTJ3 125 aaKnown RBP5.85□□□□□ -1.47
VPS39-204ENST00000561818 C9orf152Q5JTZ5 239 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 ACTL10Q5JWF8 245 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 TOMM20LQ6UXN7 152 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 Q86TA4 180 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 TMEM219Q86XT9 240 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 GBGT1Q8N5D6 347 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 WIPF2Q8TF74 440 aaPredicted RBP5.85□□□□□ -1.47
VPS39-204ENST00000561818 JMJD8Q96S16 334 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 MLST8Q9BVC4 326 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 RPP21Q9H633 154 aaKnown RBP5.85□□□□□ -1.47
VPS39-204ENST00000561818 ZFAND3Q9H8U3 227 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 ZNF331Q9NQX6 463 aaPredicted RBP5.85□□□□□ -1.47
VPS39-204ENST00000561818 DAZ1Q9NQZ3 744 aaKnown RBP5.85□□□□□ -1.47
VPS39-204ENST00000561818 PPP1R14DQ9NXH3 145 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 ZNF586Q9NXT0 402 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 V9GYV3 84 aa5.85□□□□□ -1.47
VPS39-204ENST00000561818 LRBAP50851 2863 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 TGIF2-C20orf24A0A0A6YYL0 155 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 ZNF320A2RRD8 509 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 IZUMO1RA6ND01 250 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 ZNF785A8K8V0 405 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 DIRC3C9JPN6 131 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms