RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 EXOC3-AS1Q8N2X6 119 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 IFI27L1Q96BM0 104 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 METTL26Q96S19 204 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 FBXL15Q9H469 300 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 MRPL27Q9P0M9 148 aaKnown RBP5.81□□□□□ -1.48
USP3-210ENST00000559192 COA6Q5JTJ3 125 aaKnown RBP5.81□□□□□ -1.48
USP3-210ENST00000559192 PRR7Q8TB68 274 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 DNAH12Q6ZR08 3092 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 IGHV3-66A0A0C4DH42 116 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 ATP5L2Q7Z4Y8 100 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 RNF182Q8N6D2 247 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 PRDM6Q9NQX0 595 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 TRBV20-1A0A075B6N2 111 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 C9JAW5 83 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 C16orf97H3BN30 126 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 GHRHP01286 108 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 IGKV1-16P04430 117 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 FRMD6-AS1P0C7T7 363 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 IGLL1P15814 213 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 FAM27E3Q08E93 113 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 ETDBQ3ZM63 59 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 GTSCR1Q86UQ5 136 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 TOMM7Q9P0U1 55 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 THADAQ6YHU6 1953 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 M0R381 172 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 NTN3O00634 580 aaPredicted RBP5.81□□□□□ -1.48
USP3-210ENST00000559192 NCR2O95944 276 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 LMO1P25800 156 aa5.81□□□□□ -1.48
USP3-210ENST00000559192 RP1P56715 2156 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 AHRRA9YTQ3 701 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 CCL25O15444 150 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 SLC25A20O43772 301 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 Q6AWC8 147 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 EBLN2Q6P2I7 272 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 PHLDA1Q8WV24 401 aaPredicted RBP5.8□□□□□ -1.48
USP3-210ENST00000559192 OTORQ9NRC9 128 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 CACNA1DQ01668 2161 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 MAP1BP46821 2468 aaKnown RBP5.8□□□□□ -1.48
USP3-210ENST00000559192 LY6G6EA0A0G2JKS1 128 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 IGLV2-14P01704 120 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 C1RLQ9NZP8 487 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 U3KQA8 63 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 MUC22E2RYF6 1773 aaPredicted RBP5.8□□□□□ -1.48
USP3-210ENST00000559192 IGHV3OR16-13A0A075B7E8 117 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 IGHV3-74A0A0B4J1X5 117 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 TMEM8BA6NDV4 472 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 VDAC2P45880 294 aaPredicted RBP5.8□□□□□ -1.48
USP3-210ENST00000559192 Q6ZR03 302 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 FAM90A1Q86YD7 464 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 CHTOPQ9Y3Y2 248 aaKnown RBP5.8□□□□□ -1.48
USP3-210ENST00000559192 C2orf16Q68DN1 1984 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 SMIM27A0A1W2PRY6 76 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 TM4SF5O14894 197 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 NPFFO15130 113 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 FCN3O75636 299 aa5.8□□□□□ -1.48
USP3-210ENST00000559192 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.79□□□□□ -1.48
USP3-210ENST00000559192 FAM168AQ92567 244 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 SRRM5B3KS81 715 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 D6R8Y8 96 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 CD3EP07766 207 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 GLRXP35754 106 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 PMVKQ15126 192 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 KRTAP27-1Q3LI81 207 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 DUX4L9Q6RFH8 374 aaPredicted RBP5.79□□□□□ -1.48
USP3-210ENST00000559192 Q6ZSR3 168 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 PPDPFLQ8WWR9 84 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 LINC00312Q9Y6C7 94 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 DOCK11Q5JSL3 2073 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 NDUFC2O95298 119 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 TMEM258P61165 79 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 MORN3Q6PF18 240 aaPredicted RBP5.79□□□□□ -1.48
USP3-210ENST00000559192 TRAV8-3A0A0A6YYJ7 113 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 IGHV1-24A0A0C4DH33 117 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 RNASE2P10153 161 aaKnown RBP5.79□□□□□ -1.48
USP3-210ENST00000559192 ZNF134P52741 427 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 PPP1R27Q86WC6 154 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 ZNF295-AS1Q8N0V1 137 aa5.79□□□□□ -1.48
USP3-210ENST00000559192 IGHV2-26A0A0B4J1V2 119 aa5.78□□□□□ -1.48
USP3-210ENST00000559192 IGKV3D-20A0A0C4DH25 116 aa5.78□□□□□ -1.48
USP3-210ENST00000559192 VWC2LB2RUY7 222 aa5.78□□□□□ -1.48
USP3-210ENST00000559192 PPIFP30405 207 aaKnown RBP5.78□□□□□ -1.48
USP3-210ENST00000559192 ANXA2RQ3ZCQ2 193 aa5.78□□□□□ -1.48
USP3-210ENST00000559192 C1orf162Q8NEQ5 155 aaPredicted RBP5.78□□□□□ -1.48
USP3-210ENST00000559192 TMEM126AQ9H061 195 aa5.78□□□□□ -1.48
USP3-210ENST00000559192 LTBP2Q14767 1821 aa5.78□□□□□ -1.48
USP3-210ENST00000559192 F2RL2O00254 374 aa5.78□□□□□ -1.48
USP3-210ENST00000559192 TCRAP04437 139 aa5.78□□□□□ -1.48
USP3-210ENST00000559192 CEACAM8P31997 349 aaPredicted RBP5.78□□□□□ -1.48
USP3-210ENST00000559192 KLF17Q5JT82 389 aaPredicted RBP5.78□□□□□ -1.48
USP3-210ENST00000559192 CENPVQ7Z7K6 275 aaPredicted RBP5.78□□□□□ -1.48
USP3-210ENST00000559192 DDB2Q92466 427 aa5.78□□□□□ -1.48
USP3-210ENST00000559192 PSG8Q9UQ74 426 aa5.78□□□□□ -1.48
USP3-210ENST00000559192 IGHV3-49A0A0A0MS15 119 aa5.78□□□□□ -1.48
USP3-210ENST00000559192 RBM3P98179 157 aaKnown RBP5.78□□□□□ -1.48
USP3-210ENST00000559192 RRN3P1Q2M238 152 aa5.78□□□□□ -1.48
USP3-210ENST00000559192 VWC2Q2TAL6 325 aa5.78□□□□□ -1.48
USP3-210ENST00000559192 LCNL1Q6ZST4 164 aa5.78□□□□□ -1.48
USP3-210ENST00000559192 CSTL1Q9H114 145 aa5.78□□□□□ -1.48
USP3-210ENST00000559192 SMPXQ9UHP9 88 aa5.78□□□□□ -1.48
USP3-210ENST00000559192 A0A0U1RRA0 63 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms