RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 OR2J1Q9GZK6 312 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 CYSTM1Q9H1C7 97 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 BOLA2Q9H3K6 86 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 POPDC3Q9HBV1 291 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 C14orf132Q9NPU4 83 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 BIN3Q9NQY0 253 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 OTORQ9NRC9 128 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 TAS2R7Q9NYW3 318 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 MED11Q9P086 117 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 OR52A1Q9UKL2 312 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 CHCHD2Q9Y6H1 151 aaPredicted RBP0.52□□□□□ -2.33
USP3-209ENST00000558925 CEP164Q9UPV0 1460 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 TANC2Q9HCD6 1990 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 FLG2Q5D862 2391 aaPredicted RBP0.52□□□□□ -2.33
USP3-209ENST00000558925 HELZ2Q9BYK8 2649 aaKnown RBP0.51□□□□□ -2.33
USP3-209ENST00000558925 IGKV3-7A0A075B6H7 116 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 TCRBV4S1A1TA0A5B7 111 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 MAP1LC3B2A6NCE7 125 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 TLCD2A6NGC4 264 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 A8MWV9 139 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 PPP5D1E7EU14 171 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 H7BYZ3 331 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 GPR31O00270 319 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 MGAMO43451 1857 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 ROS1P08922 2347 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 PTPRFP10586 1907 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 IDO1P14902 403 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 ZNF25P17030 456 aaPredicted RBP0.51□□□□□ -2.33
USP3-209ENST00000558925 TCTAP57738 103 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 EML5Q05BV3 1969 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 SPRNQ5BIV9 151 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 FKBP1CQ5VVH2 108 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 DCUN1D2Q6PH85 259 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 FBN3Q75N90 2809 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 ANGPTL5Q86XS5 388 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 Q8N814 137 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 C12orf29Q8N999 325 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 OR4C6Q8NH72 309 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 PPTC7Q8NI37 304 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 Q8TAT8 98 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 POP5Q969H6 163 aaKnown RBP0.51□□□□□ -2.33
USP3-209ENST00000558925 CHCHD1Q96BP2 118 aaKnown RBP0.51□□□□□ -2.33
USP3-209ENST00000558925 PLEKHB2Q96CS7 222 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 MALSU1Q96EH3 234 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 RMND5BQ96G75 393 aaPredicted RBP0.51□□□□□ -2.33
USP3-209ENST00000558925 OBSCN-AS1Q96MR7 158 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 ZNF714Q96N38 554 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 GPER1Q99527 375 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 SELENOSQ9BQE4 189 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 GGACTQ9BVM4 153 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 MAP1LC3BQ9GZQ8 125 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 PBOV1Q9GZY1 135 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 TAF9BQ9HBM6 251 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 CDC42SE1Q9NRR8 79 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 MED9Q9NWA0 146 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 KLK9Q9UKQ9 250 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 ZFP30Q9Y2G7 519 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 SOX21Q9Y651 276 aaPredicted RBP0.51□□□□□ -2.33
USP3-209ENST00000558925 SNURFQ9Y675 71 aa0.51□□□□□ -2.33
USP3-209ENST00000558925 MED12Q93074 2177 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 MCM3APO60318 1980 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 UBR2Q8IWV8 1755 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 UHRF1BP1Q6BDS2 1440 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 IGKV2-40A0A087WW87 121 aaPredicted RBP0.5□□□□□ -2.33
USP3-209ENST00000558925 ZNF736B4DX44 427 aaPredicted RBP0.5□□□□□ -2.33
USP3-209ENST00000558925 RER1O15258 196 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 CCL16O15467 120 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 GGCTO75223 188 aaKnown RBP0.5□□□□□ -2.33
USP3-209ENST00000558925 HYPMO75409 117 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 KLF7O75840 302 aaPredicted RBP0.5□□□□□ -2.33
USP3-209ENST00000558925 IGKV2D-40P01614 121 aaPredicted RBP0.5□□□□□ -2.33
USP3-209ENST00000558925 APOA2P02652 100 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 B2MP61769 119 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 MYL5Q02045 173 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 EIF3IQ13347 325 aaKnown RBP0.5□□□□□ -2.33
USP3-209ENST00000558925 RTL8BQ17RB0 113 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 SCGB2B2Q4G0G5 96 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 TMEM78Q5T7P6 136 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 C1orf140Q5VVS0 124 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 HRCT1Q6UXD1 115 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 TMEM14EPQ6UXP3 125 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 NUP35Q8NFH5 326 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 OR5D14Q8NGL3 314 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 TMEM254Q8TBM7 123 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 TEX47Q8TBZ9 253 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 RTL8AQ9BWD3 113 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 CACYBPQ9HB71 228 aaKnown RBP0.5□□□□□ -2.33
USP3-209ENST00000558925 SMPXQ9UHP9 88 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 LY96Q9Y6Y9 160 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 ALPK3Q96L96 1907 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 LAMB4A4D0S4 1761 aa0.5□□□□□ -2.33
USP3-209ENST00000558925 PBRM1Q86U86 1689 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 SYNMO15061 1565 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 ARHGEF11O15085 1522 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 TET1Q8NFU7 2136 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 LOC110117498A0A087WWA1 95 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 A0A087WX48 190 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 TRBV6-7A0A0A0MS04 114 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 TRAV10A0A0B4J240 114 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 A0A1W2PRE2 83 aa0.49□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms