RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 RANP62826 216 aaKnown RBP13.16□□□□□ -0.3
LDLR-206ENST00000557958 IL17RELQ6ZVW7 336 aa13.16□□□□□ -0.3
LDLR-206ENST00000557958 EEF1AKMT3Q96AZ1 226 aa13.16□□□□□ -0.3
LDLR-206ENST00000557958 CCDC168Q8NDH2 2452 aa13.16□□□□□ -0.3
LDLR-206ENST00000557958 TRBV7-1A0A0A6YYK4 115 aa13.16□□□□□ -0.3
LDLR-206ENST00000557958 F8W735 103 aaPredicted RBP13.16□□□□□ -0.3
LDLR-206ENST00000557958 C9orf152Q5JTZ5 239 aa13.16□□□□□ -0.3
LDLR-206ENST00000557958 LEMD1Q68G75 181 aa13.16□□□□□ -0.3
LDLR-206ENST00000557958 C5orf17Q8NAS9 161 aa13.16□□□□□ -0.3
LDLR-206ENST00000557958 ZNF502Q8TBZ5 544 aa13.16□□□□□ -0.3
LDLR-206ENST00000557958 ATP6V0BQ99437 205 aa13.16□□□□□ -0.3
LDLR-206ENST00000557958 PGPEP1LA6NFU8 196 aa13.15□□□□□ -0.3
LDLR-206ENST00000557958 FAM223BA6NKX1 122 aa13.15□□□□□ -0.3
LDLR-206ENST00000557958 AMY1AP04745 511 aa13.15□□□□□ -0.3
LDLR-206ENST00000557958 SLC25A5P05141 298 aaKnown RBP13.15□□□□□ -0.3
LDLR-206ENST00000557958 PFN1P07737 140 aaKnown RBP13.15□□□□□ -0.3
LDLR-206ENST00000557958 TRGC1P0CF51 173 aa13.15□□□□□ -0.3
LDLR-206ENST00000557958 MYCNOSP40205 109 aa13.15□□□□□ -0.3
LDLR-206ENST00000557958 LY6EQ16553 131 aa13.15□□□□□ -0.3
LDLR-206ENST00000557958 TEX38Q6PEX7 206 aa13.15□□□□□ -0.3
LDLR-206ENST00000557958 FAM223AQ8IWN6 122 aa13.15□□□□□ -0.3
LDLR-206ENST00000557958 OR10G8Q8NGN5 311 aa13.15□□□□□ -0.3
LDLR-206ENST00000557958 PYGO2Q9BRQ0 406 aa13.15□□□□□ -0.3
LDLR-206ENST00000557958 YAE1D1Q9NRH1 226 aa13.15□□□□□ -0.3
LDLR-206ENST00000557958 AURKAIP1Q9NWT8 199 aaPredicted RBP13.15□□□□□ -0.3
LDLR-206ENST00000557958 SH2D7A6NKC9 451 aaPredicted RBP13.14□□□□□ -0.31
LDLR-206ENST00000557958 G3V318 75 aa13.14□□□□□ -0.31
LDLR-206ENST00000557958 BMPR1BO00238 502 aa13.14□□□□□ -0.31
LDLR-206ENST00000557958 IGF1P05019 195 aa13.14□□□□□ -0.31
LDLR-206ENST00000557958 CTSGP08311 255 aa13.14□□□□□ -0.31
LDLR-206ENST00000557958 FRZBQ92765 325 aa13.14□□□□□ -0.31
LDLR-206ENST00000557958 OTORQ9NRC9 128 aa13.14□□□□□ -0.31
LDLR-206ENST00000557958 EPDR1Q9UM22 224 aa13.14□□□□□ -0.31
LDLR-206ENST00000557958 PGPA6NDG6 321 aa13.14□□□□□ -0.31
LDLR-206ENST00000557958 IGHV3-23P01764 117 aa13.14□□□□□ -0.31
LDLR-206ENST00000557958 UBE2G1P62253 170 aa13.14□□□□□ -0.31
LDLR-206ENST00000557958 DEFB112Q30KQ8 113 aa13.14□□□□□ -0.31
LDLR-206ENST00000557958 SRD5A3Q9H8P0 318 aa13.14□□□□□ -0.31
LDLR-206ENST00000557958 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.14□□□□□ -0.312e-7■■□□□ 12.4
LDLR-206ENST00000557958 PPP5D1E7EU14 171 aa13.13□□□□□ -0.31
LDLR-206ENST00000557958 HNF1AP20823 631 aa13.13□□□□□ -0.31
LDLR-206ENST00000557958 ATP5G2Q06055 141 aa13.13□□□□□ -0.31
LDLR-206ENST00000557958 LYPD1Q8N2G4 141 aa13.13□□□□□ -0.31
LDLR-206ENST00000557958 ATG101Q9BSB4 218 aa13.13□□□□□ -0.31
LDLR-206ENST00000557958 Q9H3A6 140 aa13.13□□□□□ -0.31
LDLR-206ENST00000557958 RABAC1Q9UI14 185 aa13.13□□□□□ -0.31
LDLR-206ENST00000557958 A0A1W2PPQ1 181 aa13.12□□□□□ -0.31
LDLR-206ENST00000557958 LINC01548A6NM66 108 aa13.12□□□□□ -0.31
LDLR-206ENST00000557958 H3BUA1 57 aa13.12□□□□□ -0.31
LDLR-206ENST00000557958 IGHG2P01859 326 aa13.12□□□□□ -0.31
LDLR-206ENST00000557958 GPR183P32249 361 aa13.12□□□□□ -0.31
LDLR-206ENST00000557958 ERVFC1-1P60608 527 aa13.12□□□□□ -0.31
LDLR-206ENST00000557958 USF2Q15853 346 aaPredicted RBP13.12□□□□□ -0.31
LDLR-206ENST00000557958 C19orf54Q5BKX5 351 aa13.12□□□□□ -0.31
LDLR-206ENST00000557958 OR10D4PQ8NGN7 298 aa13.12□□□□□ -0.31
LDLR-206ENST00000557958 CMTM2Q8TAZ6 248 aa13.12□□□□□ -0.31
LDLR-206ENST00000557958 SMIM12Q96EX1 92 aa13.12□□□□□ -0.31
LDLR-206ENST00000557958 IGF2BP2-AS1Q96M15 143 aa13.12□□□□□ -0.31
LDLR-206ENST00000557958 ABCA1O95477 2261 aa13.12□□□□□ -0.31
LDLR-206ENST00000557958 K7EN84 100 aa13.12□□□□□ -0.31
LDLR-206ENST00000557958 GGCTO75223 188 aaKnown RBP13.12□□□□□ -0.31
LDLR-206ENST00000557958 RAB9AP51151 201 aa13.12□□□□□ -0.31
LDLR-206ENST00000557958 FOXL1Q12952 345 aa13.12□□□□□ -0.31
LDLR-206ENST00000557958 GPR61Q9BZJ8 451 aa13.12□□□□□ -0.31
LDLR-206ENST00000557958 ZNF469Q96JG9 3925 aaPredicted RBP13.11□□□□□ -0.31
LDLR-206ENST00000557958 TRBV19A0A075B6N1 114 aa13.11□□□□□ -0.31
LDLR-206ENST00000557958 BRI3O95415 125 aa13.11□□□□□ -0.31
LDLR-206ENST00000557958 CLEC3BP05452 202 aa13.11□□□□□ -0.31
LDLR-206ENST00000557958 RPL7P18124 248 aaKnown RBP13.11□□□□□ -0.31
LDLR-206ENST00000557958 RELQ04864 619 aaPredicted RBP13.11□□□□□ -0.31
LDLR-206ENST00000557958 PDE6HQ13956 83 aa13.11□□□□□ -0.31
LDLR-206ENST00000557958 TMEM183BQ1AE95 376 aa13.11□□□□□ -0.31
LDLR-206ENST00000557958 OR5R1Q8NH85 324 aa13.11□□□□□ -0.31
LDLR-206ENST00000557958 FMC1Q96HJ9 113 aa13.11□□□□□ -0.31
LDLR-206ENST00000557958 SMR3AQ99954 134 aa13.11□□□□□ -0.31
LDLR-206ENST00000557958 CHRDL1Q9BU40 450 aa13.11□□□□□ -0.31
LDLR-206ENST00000557958 ZNF586Q9NXT0 402 aa13.11□□□□□ -0.31
LDLR-206ENST00000557958 TRAV9-1A0A075B6T8 112 aa13.1□□□□□ -0.31
LDLR-206ENST00000557958 CD5LO43866 347 aa13.1□□□□□ -0.31
LDLR-206ENST00000557958 GCGP01275 180 aa13.1□□□□□ -0.31
LDLR-206ENST00000557958 SNRPCP09234 159 aaKnown RBP13.1□□□□□ -0.31
LDLR-206ENST00000557958 FAM3BP58499 235 aaPredicted RBP13.1□□□□□ -0.31
LDLR-206ENST00000557958 BAGE2Q86Y30 109 aa13.1□□□□□ -0.31
LDLR-206ENST00000557958 MS4A10Q96PG2 267 aa13.1□□□□□ -0.31
LDLR-206ENST00000557958 ZANQ9Y493 2812 aa13.1□□□□□ -0.31
LDLR-206ENST00000557958 ISLRO14498 428 aa13.1□□□□□ -0.31
LDLR-206ENST00000557958 IGLC2P0DOY2 106 aa13.1□□□□□ -0.31
LDLR-206ENST00000557958 MGST1P10620 155 aaKnown RBP13.1□□□□□ -0.31
LDLR-206ENST00000557958 ADMP35318 185 aa13.1□□□□□ -0.31
LDLR-206ENST00000557958 RPL19P84098 196 aaKnown RBP13.1□□□□□ -0.31
LDLR-206ENST00000557958 COA6Q5JTJ3 125 aaKnown RBP13.1□□□□□ -0.31
LDLR-206ENST00000557958 GFI1BQ5VTD9 330 aa13.1□□□□□ -0.31
LDLR-206ENST00000557958 LINC00469Q8N7U9 141 aa13.1□□□□□ -0.31
LDLR-206ENST00000557958 PRDM13Q9H4Q3 707 aa13.1□□□□□ -0.31
LDLR-206ENST00000557958 GNB4Q9HAV0 340 aa13.1□□□□□ -0.31
LDLR-206ENST00000557958 OSTCQ9NRP0 149 aa13.1□□□□□ -0.31
LDLR-206ENST00000557958 KLF12Q9Y4X4 402 aa13.1□□□□□ -0.31
LDLR-206ENST00000557958 ITPR3Q14573 2671 aa13.09□□□□□ -0.31
LDLR-206ENST00000557958 TRGV3P03979 118 aa13.09□□□□□ -0.31
LDLR-206ENST00000557958 TCRAP04437 139 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 149.2 ms