RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 SIGLEC15Q6ZMC9 328 aa10.66□□□□□ -0.7
SHMT2-222ENST00000555774 CIARTQ8N365 385 aaPredicted RBP10.66□□□□□ -0.7
SHMT2-222ENST00000555774 ZNF491Q8N8L2 437 aa10.66□□□□□ -0.7
SHMT2-222ENST00000555774 LPAR2Q9HBW0 351 aa10.66□□□□□ -0.7
SHMT2-222ENST00000555774 ARFGEF3Q5TH69 2177 aa10.66□□□□□ -0.7
SHMT2-222ENST00000555774 A6NNC1 897 aa10.66□□□□□ -0.7
SHMT2-222ENST00000555774 CRXO43186 299 aaPredicted RBP10.66□□□□□ -0.7
SHMT2-222ENST00000555774 PDE6HQ13956 83 aa10.66□□□□□ -0.7
SHMT2-222ENST00000555774 Q6AWC8 147 aa10.66□□□□□ -0.7
SHMT2-222ENST00000555774 Q6ZN92 141 aa10.66□□□□□ -0.7
SHMT2-222ENST00000555774 TMEM70Q9BUB7 260 aa10.66□□□□□ -0.7
SHMT2-222ENST00000555774 TRAV8-1A0A0A6YYK1 113 aa10.65□□□□□ -0.7
SHMT2-222ENST00000555774 SERTM2A0A1B0GWG4 89 aa10.65□□□□□ -0.7
SHMT2-222ENST00000555774 MRPS12O15235 138 aaKnown RBP10.65□□□□□ -0.7
SHMT2-222ENST00000555774 DLEU1O43261 78 aa10.65□□□□□ -0.7
SHMT2-222ENST00000555774 OR5AL1P0C617 328 aa10.65□□□□□ -0.7
SHMT2-222ENST00000555774 G0S2P27469 103 aa10.65□□□□□ -0.7
SHMT2-222ENST00000555774 LDLRAD2Q5SZI1 272 aa10.65□□□□□ -0.7
SHMT2-222ENST00000555774 MRPS16Q9Y3D3 137 aaKnown RBP10.65□□□□□ -0.7
SHMT2-222ENST00000555774 ZGRF1Q86YA3 2104 aa10.65□□□□□ -0.7
SHMT2-222ENST00000555774 PRTN3P24158 256 aa10.64□□□□□ -0.71
SHMT2-222ENST00000555774 RIGQ13278 110 aa10.64□□□□□ -0.71
SHMT2-222ENST00000555774 PSG3Q16557 428 aa10.64□□□□□ -0.71
SHMT2-222ENST00000555774 FAM120AOSQ5T036 256 aa10.64□□□□□ -0.71
SHMT2-222ENST00000555774 TMEM208Q9BTX3 173 aa10.64□□□□□ -0.71
SHMT2-222ENST00000555774 PSG8Q9UQ74 426 aa10.64□□□□□ -0.71
SHMT2-222ENST00000555774 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.64□□□□□ -0.71
SHMT2-222ENST00000555774 OOSP1A8MZH6 123 aa10.64□□□□□ -0.71
SHMT2-222ENST00000555774 IL4P05112 153 aa10.64□□□□□ -0.71
SHMT2-222ENST00000555774 C5orf64Q2M2E5 130 aa10.64□□□□□ -0.71
SHMT2-222ENST00000555774 Q56UQ5 140 aa10.64□□□□□ -0.71
SHMT2-222ENST00000555774 LCN12Q6JVE5 192 aa10.64□□□□□ -0.71
SHMT2-222ENST00000555774 ARL6IP6Q8N6S5 226 aa10.64□□□□□ -0.71
SHMT2-222ENST00000555774 NEU4Q8WWR8 484 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-222ENST00000555774 ZNF414Q96IQ9 312 aa10.64□□□□□ -0.71
SHMT2-222ENST00000555774 ZNF292O60281 2723 aa10.64□□□□□ -0.71
SHMT2-222ENST00000555774 IGLV11-55A0A075B6I3 123 aa10.63□□□□□ -0.71
SHMT2-222ENST00000555774 LOC105371242A0A075B767 164 aa10.63□□□□□ -0.71
SHMT2-222ENST00000555774 A0A1B0GUT8 65 aa10.63□□□□□ -0.71
SHMT2-222ENST00000555774 LINC00614P0C842 121 aa10.63□□□□□ -0.71
SHMT2-222ENST00000555774 MFAP4P55083 255 aa10.63□□□□□ -0.71
SHMT2-222ENST00000555774 ARF6P62330 175 aa10.63□□□□□ -0.71
SHMT2-222ENST00000555774 BATFQ16520 125 aa10.63□□□□□ -0.71
SHMT2-222ENST00000555774 CCDC144NLQ6NUI1 221 aa10.63□□□□□ -0.71
SHMT2-222ENST00000555774 IGFBPL1Q8WX77 278 aa10.63□□□□□ -0.71
SHMT2-222ENST00000555774 ZC2HC1AQ96GY0 325 aa10.63□□□□□ -0.71
SHMT2-222ENST00000555774 LAMTOR2Q9Y2Q5 125 aa10.63□□□□□ -0.71
SHMT2-222ENST00000555774 IGHV1-24A0A0C4DH33 117 aa10.63□□□□□ -0.71
SHMT2-222ENST00000555774 SH2D7A6NKC9 451 aaPredicted RBP10.63□□□□□ -0.71
SHMT2-222ENST00000555774 OVOL3O00110 214 aa10.63□□□□□ -0.71
SHMT2-222ENST00000555774 C1orf122Q6ZSJ8 110 aa10.63□□□□□ -0.71
SHMT2-222ENST00000555774 RP1L1Q8IWN7 2480 aaPredicted RBP10.63□□□□□ -0.71
SHMT2-222ENST00000555774 CCL21O00585 134 aa10.62□□□□□ -0.71
SHMT2-222ENST00000555774 GNG7O60262 68 aa10.62□□□□□ -0.71
SHMT2-222ENST00000555774 SCGB2A1O75556 95 aa10.62□□□□□ -0.71
SHMT2-222ENST00000555774 FOSL1P15407 271 aa10.62□□□□□ -0.71
SHMT2-222ENST00000555774 ZNF562Q6V9R5 426 aa10.62□□□□□ -0.71
SHMT2-222ENST00000555774 TTC9CQ8N5M4 171 aa10.62□□□□□ -0.71
SHMT2-222ENST00000555774 KIR3DL3Q8N743 410 aa10.62□□□□□ -0.71
SHMT2-222ENST00000555774 HILPDAQ9Y5L2 63 aa10.62□□□□□ -0.71
SHMT2-222ENST00000555774 FBLL1A6NHQ2 334 aaKnown RBP10.62□□□□□ -0.71
SHMT2-222ENST00000555774 ZNF785A8K8V0 405 aa10.62□□□□□ -0.71
SHMT2-222ENST00000555774 LEPROTL1O95214 131 aa10.62□□□□□ -0.71
SHMT2-222ENST00000555774 GRNP28799 593 aaKnown RBP10.62□□□□□ -0.71
SHMT2-222ENST00000555774 TSPOP30536 169 aa10.62□□□□□ -0.71
SHMT2-222ENST00000555774 ATOH7Q8N100 152 aa10.62□□□□□ -0.71
SHMT2-222ENST00000555774 ARPC1AQ92747 370 aa10.62□□□□□ -0.71
SHMT2-222ENST00000555774 AAMDCQ9H7C9 122 aa10.62□□□□□ -0.71
SHMT2-222ENST00000555774 MALRD1Q5VYJ5 2156 aa10.61□□□□□ -0.71
SHMT2-222ENST00000555774 SYS1-DBNDD2H3BUS1 97 aa10.61□□□□□ -0.71
SHMT2-222ENST00000555774 TOX4O94842 621 aa10.61□□□□□ -0.71
SHMT2-222ENST00000555774 FCGR2BP31994 310 aaPredicted RBP10.61□□□□□ -0.71
SHMT2-222ENST00000555774 PSG9Q00887 426 aa10.61□□□□□ -0.71
SHMT2-222ENST00000555774 C11orf71Q6IPW1 123 aa10.61□□□□□ -0.71
SHMT2-222ENST00000555774 C17orf77Q96MU5 243 aa10.61□□□□□ -0.71
SHMT2-222ENST00000555774 FANCD2OSQ96PS1 177 aa10.61□□□□□ -0.71
SHMT2-222ENST00000555774 THYN1Q9P016 225 aa10.61□□□□□ -0.71
SHMT2-222ENST00000555774 GOLT1BQ9Y3E0 138 aa10.61□□□□□ -0.71
SHMT2-222ENST00000555774 BSNQ9UPA5 3926 aa10.61□□□□□ -0.71
SHMT2-222ENST00000555774 CT45A10P0DMU9 189 aa10.61□□□□□ -0.71
SHMT2-222ENST00000555774 UCNP55089 124 aa10.61□□□□□ -0.71
SHMT2-222ENST00000555774 MINOS1Q5TGZ0 78 aa10.61□□□□□ -0.71
SHMT2-222ENST00000555774 ST20Q9HBF5 79 aa10.61□□□□□ -0.71
SHMT2-222ENST00000555774 CLEC5AQ9NY25 188 aa10.61□□□□□ -0.71
SHMT2-222ENST00000555774 MINOS1-NBL1R4GNA1 71 aa10.61□□□□□ -0.71
SHMT2-222ENST00000555774 DMXL1Q9Y485 3027 aa10.6□□□□□ -0.71
SHMT2-222ENST00000555774 S100A7P31151 101 aa10.6□□□□□ -0.71
SHMT2-222ENST00000555774 CSN1S1P47710 185 aa10.6□□□□□ -0.71
SHMT2-222ENST00000555774 EBI3Q14213 229 aa10.6□□□□□ -0.71
SHMT2-222ENST00000555774 HES1Q14469 280 aa10.6□□□□□ -0.71
SHMT2-222ENST00000555774 PET117Q6UWS5 81 aa10.6□□□□□ -0.71
SHMT2-222ENST00000555774 COX8CQ7Z4L0 72 aa10.6□□□□□ -0.71
SHMT2-222ENST00000555774 Q8N6K4 173 aa10.6□□□□□ -0.71
SHMT2-222ENST00000555774 HSPB8Q9UJY1 196 aa10.6□□□□□ -0.71
SHMT2-222ENST00000555774 BOD1L1Q8NFC6 3051 aa10.6□□□□□ -0.71
SHMT2-222ENST00000555774 IGLL1P15814 213 aa10.59□□□□□ -0.71
SHMT2-222ENST00000555774 KLRD1Q13241 179 aa10.59□□□□□ -0.71
SHMT2-222ENST00000555774 MAJINQ3KP22 176 aa10.59□□□□□ -0.71
SHMT2-222ENST00000555774 TMEM191AQ9H0A3 160 aa10.59□□□□□ -0.71
SHMT2-222ENST00000555774 C21orf62Q9NYP8 219 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms