RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 RYR3Q15413 4870 aa0.34□□□□□ -2.36
SCFD1-216ENST00000555550 PBRM1Q86U86 1689 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 ROCK1Q13464 1354 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 BSNQ9UPA5 3926 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 TECPR2O15040 1411 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.33□□□□□ -2.36
SCFD1-216ENST00000555550 E7EUB6 86 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 HMGB3O15347 200 aaKnown RBP0.33□□□□□ -2.36
SCFD1-216ENST00000555550 CYB5BO43169 146 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 UBL3O95164 117 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 GLRXP35754 106 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 DYNLT3P51808 116 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 TAS2R41P59536 307 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 RAB4BP61018 213 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 RHOBP62745 196 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 MRPS25P82663 173 aaKnown RBP0.33□□□□□ -2.36
SCFD1-216ENST00000555550 POU6F1Q14863 301 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 TMED2Q15363 201 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 KHDC3LQ587J8 217 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 C1orf134Q5TEV5 83 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 FAM19A2Q8N3H0 131 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 OR10K1Q8NGX5 313 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 OR2T10Q8NGZ9 312 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 OR4C6Q8NH72 309 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 BTF3L4Q96K17 158 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 OBSCN-AS1Q96MR7 158 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 PAIP2Q9BPZ3 127 aaKnown RBP0.33□□□□□ -2.36
SCFD1-216ENST00000555550 RTL8AQ9BWD3 113 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 LRTM1Q9HBL6 345 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 OTORQ9NRC9 128 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 OR52A1Q9UKL2 312 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 PCTPQ9UKL6 214 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 CECR2Q9BXF3 1484 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 STAB2Q8WWQ8 2551 aa0.33□□□□□ -2.36
SCFD1-216ENST00000555550 N4BP2Q86UW6 1770 aaPredicted RBP0.32□□□□□ -2.36
SCFD1-216ENST00000555550 UHRF1BP1Q6BDS2 1440 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 A0A1W2PRE2 83 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 C1orf196B1AJZ1 125 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 GEMIN2O14893 280 aaKnown RBP0.32□□□□□ -2.36
SCFD1-216ENST00000555550 ATG12O94817 140 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 GADD45GO95257 159 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 DHFRP00374 187 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 IFNA7P01567 189 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 TRGC2P03986 189 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 CXCL1P09341 107 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 NBEAP1P0C6P0 100 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 UBBP0CG47 229 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 HLA-EP13747 358 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 DSCR4P56555 118 aaPredicted RBP0.32□□□□□ -2.36
SCFD1-216ENST00000555550 RPL19P84098 196 aaKnown RBP0.32□□□□□ -2.36
SCFD1-216ENST00000555550 SPRNQ5BIV9 151 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 SPANXN5Q5MJ07 72 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 C1orf140Q5VVS0 124 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 Q5XG85 94 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 TMEM14EPQ6UXP3 125 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 TRAPPC6BQ86SZ2 158 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 PHF13Q86YI8 300 aaPredicted RBP0.32□□□□□ -2.36
SCFD1-216ENST00000555550 LINC00269Q8N2A0 174 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 DNAJC9Q8WXX5 260 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 NCAPD3P42695 1498 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 NAV2Q8IVL1 2488 aa0.32□□□□□ -2.36
SCFD1-216ENST00000555550 TAF1LQ8IZX4 1826 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 FRAS1Q86XX4 4008 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 E9PCH4 1651 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 TET1Q8NFU7 2136 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 A0A087WX48 190 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 TRBV6-8A0A0A6YYG3 113 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 TRAV5A0A0B4J249 113 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 DUXBA0A1W2PPF3 345 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 TLCD2A6NGC4 264 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 A8MWV9 139 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 ZNF736B4DX44 427 aaPredicted RBP0.31□□□□□ -2.36
SCFD1-216ENST00000555550 E5RI56 91 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 H7C1C5 153 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 GPR31O00270 319 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 CCL16O15467 120 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 FABP1P07148 127 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 MGST1P10620 155 aaKnown RBP0.31□□□□□ -2.36
SCFD1-216ENST00000555550 PHBP35232 272 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 ARPP19P56211 112 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 LCN6P62502 163 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 UBE2BP63146 152 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 BASP1P80723 227 aaKnown RBP0.31□□□□□ -2.36
SCFD1-216ENST00000555550 TMED4Q7Z7H5 227 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 SLC30A7Q8NEW0 376 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 WFDC11Q8NEX6 87 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 FAM172AQ8WUF8 416 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 SFT2D1Q8WV19 159 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 DIRC1Q969H9 104 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 C14orf132Q9NPU4 83 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 GID8Q9NWU2 228 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 NHP2Q9NX24 153 aaKnown RBP0.31□□□□□ -2.36
SCFD1-216ENST00000555550 STOML2Q9UJZ1 356 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 SCN3AQ9NY46 2000 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 FREM3P0C091 2139 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 RTL9Q8NET4 1388 aa0.31□□□□□ -2.36
SCFD1-216ENST00000555550 PIK3C2AO00443 1686 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 CTTNBP2Q8WZ74 1663 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 TNS3Q68CZ2 1445 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 YTHDC2Q9H6S0 1430 aaKnown RBP0.3□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms