RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 STAG3L3P0CL85 134 aa9.29□□□□□ -0.92
SHMT2-212ENST00000554467 HOXB4P17483 251 aaPredicted RBP9.29□□□□□ -0.92
SHMT2-212ENST00000554467 VAMP3Q15836 100 aa9.29□□□□□ -0.92
SHMT2-212ENST00000554467 SRSF12Q8WXF0 261 aaKnown RBP9.29□□□□□ -0.92
SHMT2-212ENST00000554467 PMCHP20382 165 aa9.29□□□□□ -0.92
SHMT2-212ENST00000554467 GCHFRP30047 84 aa9.29□□□□□ -0.92
SHMT2-212ENST00000554467 LMO4P61968 165 aa9.29□□□□□ -0.92
SHMT2-212ENST00000554467 RHOBP62745 196 aa9.29□□□□□ -0.92
SHMT2-212ENST00000554467 CFHR4Q92496 578 aa9.29□□□□□ -0.92
SHMT2-212ENST00000554467 ZNF586Q9NXT0 402 aa9.29□□□□□ -0.92
SHMT2-212ENST00000554467 NBPF19A0A087WUL8 3843 aa9.29□□□□□ -0.92
SHMT2-212ENST00000554467 TEX22C9J3V5 150 aa9.28□□□□□ -0.92
SHMT2-212ENST00000554467 M0R1W7 72 aa9.28□□□□□ -0.92
SHMT2-212ENST00000554467 TAX1BP3O14907 124 aa9.28□□□□□ -0.92
SHMT2-212ENST00000554467 CRYBB3P26998 211 aa9.28□□□□□ -0.92
SHMT2-212ENST00000554467 AMTP48728 403 aa9.28□□□□□ -0.92
SHMT2-212ENST00000554467 KCNIP2Q9NS61 270 aa9.28□□□□□ -0.92
SHMT2-212ENST00000554467 ODF3BA8MYP8 253 aa9.28□□□□□ -0.92
SHMT2-212ENST00000554467 RIPPLY3P57055 190 aa9.28□□□□□ -0.92
SHMT2-212ENST00000554467 EAF1Q96JC9 268 aaPredicted RBP9.28□□□□□ -0.92
SHMT2-212ENST00000554467 CCL19Q99731 98 aa9.28□□□□□ -0.92
SHMT2-212ENST00000554467 TLN2Q9Y4G6 2542 aa9.28□□□□□ -0.92
SHMT2-212ENST00000554467 OR2T8A6NH00 312 aa9.28□□□□□ -0.92
SHMT2-212ENST00000554467 SNURFLB1AK76 121 aa9.28□□□□□ -0.92
SHMT2-212ENST00000554467 TOX4O94842 621 aa9.28□□□□□ -0.92
SHMT2-212ENST00000554467 SUB1P53999 127 aaKnown RBP eCLIP9.28□□□□□ -0.922e-7■■■□□ 15.5
SHMT2-212ENST00000554467 SPATA12Q7Z6I5 190 aa9.28□□□□□ -0.92
SHMT2-212ENST00000554467 IGKV1D-37A0A075B6S9 117 aa9.27□□□□□ -0.92
SHMT2-212ENST00000554467 PRB4P10163 310 aaPredicted RBP9.27□□□□□ -0.92
SHMT2-212ENST00000554467 FAM120AOSQ5T036 256 aa9.27□□□□□ -0.92
SHMT2-212ENST00000554467 SGK494Q96LW2 274 aa9.27□□□□□ -0.92
SHMT2-212ENST00000554467 MRPL27Q9P0M9 148 aaKnown RBP9.27□□□□□ -0.92
SHMT2-212ENST00000554467 SAP30O75446 220 aa9.27□□□□□ -0.93
SHMT2-212ENST00000554467 IGLL1P15814 213 aa9.27□□□□□ -0.93
SHMT2-212ENST00000554467 PQLC2Q6ZP29 291 aa9.27□□□□□ -0.93
SHMT2-212ENST00000554467 OR8I2Q8N0Y5 310 aa9.27□□□□□ -0.93
SHMT2-212ENST00000554467 PERPQ96FX8 193 aa9.27□□□□□ -0.93
SHMT2-212ENST00000554467 KCNS1Q96KK3 526 aa9.27□□□□□ -0.93
SHMT2-212ENST00000554467 RNASE7Q9H1E1 156 aaKnown RBP9.27□□□□□ -0.93
SHMT2-212ENST00000554467 OVOL3O00110 214 aa9.27□□□□□ -0.93
SHMT2-212ENST00000554467 NBR2O15453 112 aa9.27□□□□□ -0.93
SHMT2-212ENST00000554467 ORM2P19652 201 aa9.27□□□□□ -0.93
SHMT2-212ENST00000554467 CEACAM3P40198 252 aa9.27□□□□□ -0.93
SHMT2-212ENST00000554467 ZNF503Q96F45 646 aa9.27□□□□□ -0.93
SHMT2-212ENST00000554467 SIRPDQ9H106 197 aa9.27□□□□□ -0.93
SHMT2-212ENST00000554467 IL36BQ9NZH7 164 aa9.27□□□□□ -0.93
SHMT2-212ENST00000554467 SH2D7A6NKC9 451 aaPredicted RBP9.26□□□□□ -0.93
SHMT2-212ENST00000554467 MT-CO2P00403 227 aa9.26□□□□□ -0.93
SHMT2-212ENST00000554467 PAX2Q02962 417 aa9.26□□□□□ -0.93
SHMT2-212ENST00000554467 IGHV4-61A0A0C4DH41 118 aa9.26□□□□□ -0.93
SHMT2-212ENST00000554467 HSBP1L1C9JCN9 74 aa9.26□□□□□ -0.93
SHMT2-212ENST00000554467 CA1P00915 261 aaPredicted RBP9.26□□□□□ -0.93
SHMT2-212ENST00000554467 NBEAP1P0C6P0 100 aa9.26□□□□□ -0.93
SHMT2-212ENST00000554467 PYYP10082 97 aa9.26□□□□□ -0.93
SHMT2-212ENST00000554467 MPV17L2Q567V2 206 aa9.26□□□□□ -0.93
SHMT2-212ENST00000554467 AMMECR1LQ6DCA0 310 aa9.26□□□□□ -0.93
SHMT2-212ENST00000554467 MRPL54Q6P161 138 aaKnown RBP9.26□□□□□ -0.93
SHMT2-212ENST00000554467 TSKUQ8WUA8 353 aa9.26□□□□□ -0.93
SHMT2-212ENST00000554467 CACNG8Q8WXS5 425 aa9.26□□□□□ -0.93
SHMT2-212ENST00000554467 ZNF324O75467 553 aaPredicted RBP9.25□□□□□ -0.93
SHMT2-212ENST00000554467 GNG4P50150 75 aa9.25□□□□□ -0.93
SHMT2-212ENST00000554467 PRR27Q6MZM9 219 aa9.25□□□□□ -0.93
SHMT2-212ENST00000554467 TNFRSF19Q9NS68 423 aa9.25□□□□□ -0.93
SHMT2-212ENST00000554467 CCDC168Q8NDH2 2452 aa9.25□□□□□ -0.93
SHMT2-212ENST00000554467 ATP5J2P56134 94 aa9.25□□□□□ -0.93
SHMT2-212ENST00000554467 PATE2Q6UY27 113 aa9.25□□□□□ -0.93
SHMT2-212ENST00000554467 OR1B1Q8NGR6 318 aa9.25□□□□□ -0.93
SHMT2-212ENST00000554467 MXRA5Q9NR99 2828 aa9.25□□□□□ -0.93
SHMT2-212ENST00000554467 HELTA6NFD8 242 aa9.25□□□□□ -0.93
SHMT2-212ENST00000554467 FNDC10F2Z333 226 aa9.25□□□□□ -0.93
SHMT2-212ENST00000554467 H3BTX0 84 aa9.25□□□□□ -0.93
SHMT2-212ENST00000554467 COX7A2P2O60397 106 aa9.25□□□□□ -0.93
SHMT2-212ENST00000554467 SAA4P35542 130 aa9.25□□□□□ -0.93
SHMT2-212ENST00000554467 NDPQ00604 133 aa9.25□□□□□ -0.93
SHMT2-212ENST00000554467 CENPWQ5EE01 88 aa9.25□□□□□ -0.93
SHMT2-212ENST00000554467 CLUHP3Q96NS8 147 aa9.25□□□□□ -0.93
SHMT2-212ENST00000554467 F11RQ9Y624 299 aaKnown RBP9.25□□□□□ -0.93
SHMT2-212ENST00000554467 INS-IGF2F8WCM5 200 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 KLHDC1Q8N7A1 406 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 LINC00479Q96M42 142 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 MEGF9Q9H1U4 602 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 NAT8BQ9UHF3 227 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 CDC42EP3Q9UKI2 254 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 SOX21Q9Y651 276 aaPredicted RBP9.24□□□□□ -0.93
SHMT2-212ENST00000554467 APCP25054 2843 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 TCRBV4S1A1TA0A5B7 111 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 GAGE12BA1L429 117 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 ATP5IP56385 69 aaPredicted RBP9.24□□□□□ -0.93
SHMT2-212ENST00000554467 EBLN2Q6P2I7 272 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 BRD3OSQ6XYD6 125 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 KIR3DL3Q8N743 410 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 FAM168AQ92567 244 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 ZNF355PQ9NSJ1 428 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 TEX15Q9BXT5 2789 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 IGHV4-30-2A0A087WSY4 118 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 COL8A1P27658 744 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 C5orf64Q2M2E5 130 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 TMEM136Q6ZRR5 245 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 PIP4P2Q8N4L2 257 aa9.24□□□□□ -0.93
SHMT2-212ENST00000554467 IGHV3-23P01764 117 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms