RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 HIST1H2BJP06899 126 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 BCL2P10415 239 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 FABP4P15090 132 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 RPS4Y1P22090 263 aaKnown RBP1.33□□□□□ -2.2
VRK1-202ENST00000553683 HIST1H2BOP23527 126 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 CRYBB3P26998 211 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 OR10J1P30954 320 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 HIST1H2BBP33778 126 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 PFN2P35080 140 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 MYCNOSP40205 109 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 LPAR6P43657 344 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 ATP5G3P48201 142 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 ZNF140P52738 457 aaPredicted RBP1.33□□□□□ -2.2
VRK1-202ENST00000553683 FOXA3P55318 350 aaPredicted RBP1.33□□□□□ -2.2
VRK1-202ENST00000553683 H2BFSP57053 126 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 HIST1H2BDP58876 126 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 RPS23P62266 143 aaKnown RBP1.33□□□□□ -2.2
VRK1-202ENST00000553683 HIST1H2BCP62807 126 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 HBG1P69891 147 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 HBG2P69892 147 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 SLC35A1P78382 337 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 AKR1C1Q04828 323 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 KLRD1Q13241 179 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 PNOCQ13519 176 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 CCL15Q16663 113 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 HIST2H2BEQ16778 126 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 SP6Q3SY56 376 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.33□□□□□ -2.2
VRK1-202ENST00000553683 ZNF773Q6PK81 442 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 HEPN1Q6WQI6 88 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 DGAT2L6Q6ZPD8 337 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 TMEM136Q6ZRR5 245 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 Q6ZUT4 128 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 ATOH7Q8N100 152 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 ZFP41Q8N8Y5 198 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 LINC00301Q8NCQ3 95 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 OR2M3Q8NG83 312 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 OR4C16Q8NGL9 310 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 OR4A5Q8NH83 315 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 MFSD8Q8NHS3 518 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 PPTC7Q8NI37 304 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 OR51E1Q8TCB6 317 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 C10orf82Q8WW14 230 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 PSMF1Q92530 271 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 CCL17Q92583 94 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 HIST1H2BHQ93079 126 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 IGF2BP2-AS1Q96M15 143 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 HIST1H2BNQ99877 126 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 HIST1H2BMQ99879 126 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 PRSS27Q9BQR3 290 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 ATG5Q9H1Y0 275 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 MED28Q9H204 178 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 C16orf95Q9H693 158 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 OTORQ9NRC9 128 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 ASF1BQ9NVP2 202 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 FKBP11Q9NYL4 201 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 POMPQ9Y244 141 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 MPC1Q9Y5U8 109 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 UBR4Q5T4S7 5183 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 DIP2CQ9Y2E4 1556 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 PCLOQ9Y6V0 5065 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 HECW1Q76N89 1606 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 NAV3Q8IVL0 2385 aa1.33□□□□□ -2.2
VRK1-202ENST00000553683 SMG1Q96Q15 3661 aaKnown RBP1.33□□□□□ -2.2
VRK1-202ENST00000553683 BAZ2AQ9UIF9 1905 aaKnown RBP1.32□□□□□ -2.2
VRK1-202ENST00000553683 ZC3H13Q5T200 1668 aaKnown RBP1.32□□□□□ -2.2
VRK1-202ENST00000553683 ITPR1Q14643 2758 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 LRRK2Q5S007 2527 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 PKD1L1Q8TDX9 2849 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 AGLP35573 1532 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 ATP7AQ04656 1500 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 UGGT2Q9NYU1 1516 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 TRBV19A0A075B6N1 114 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 A0A087X0T9 212 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 TRGV10A0A0A0MS01 117 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 IGHV2-26A0A0B4J1V2 119 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 TRAV8-4A0A0B4J246 113 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 TRAV8-6A0A0B4J262 113 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 TRAV4A0A0B4J268 109 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 IGHV1-69DA0A0B4J2H0 117 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 TRDV1A0A1B0GX56 115 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 TCRBV3S1A0A5B6 114 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 ODAMA1E959 279 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 OR51F1A6NGY5 319 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 ZNF727A8MUV8 499 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 MCRIP1C9JLW8 97 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 J3QT63 122 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 M0R233 179 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 RER1O15258 196 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 PDCD6O75340 191 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 KLF7O75840 302 aaPredicted RBP1.32□□□□□ -2.2
VRK1-202ENST00000553683 DPM2O94777 84 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 OR2A4O95047 310 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 CA2P00918 260 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 HRASP01112 189 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 SLC35G6P0C7Q6 338 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 IGLC2P0DOY2 106 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 IGLC3P0DOY3 106 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 CRYGSP22914 178 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 NFYBP25208 207 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms