RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 TYMSP04818 313 aa12.96□□□□□ -0.33
CHMP1A-204ENST00000547687 LYZP61626 148 aa12.96□□□□□ -0.33
CHMP1A-204ENST00000547687 ASPHD1Q5U4P2 390 aa12.96□□□□□ -0.33
CHMP1A-204ENST00000547687 ZNF329Q86UD4 541 aa12.96□□□□□ -0.33
CHMP1A-204ENST00000547687 PIFOQ8TCI5 191 aa12.96□□□□□ -0.33
CHMP1A-204ENST00000547687 BTF3L4Q96K17 158 aa12.96□□□□□ -0.33
CHMP1A-204ENST00000547687 DUX5Q96PT3 197 aa12.96□□□□□ -0.33
CHMP1A-204ENST00000547687 C1RLQ9NZP8 487 aa12.96□□□□□ -0.33
CHMP1A-204ENST00000547687 HIGD1AQ9Y241 93 aa12.96□□□□□ -0.33
CHMP1A-204ENST00000547687 FABP1P07148 127 aa12.96□□□□□ -0.34
CHMP1A-204ENST00000547687 SNRPCP09234 159 aaKnown RBP12.96□□□□□ -0.34
CHMP1A-204ENST00000547687 RD3LP0DJH9 198 aa12.96□□□□□ -0.34
CHMP1A-204ENST00000547687 OR5I1Q13606 314 aa12.96□□□□□ -0.34
CHMP1A-204ENST00000547687 TTC9CQ8N5M4 171 aa12.96□□□□□ -0.34
CHMP1A-204ENST00000547687 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.96□□□□□ -0.34
CHMP1A-204ENST00000547687 ZNF320A2RRD8 509 aa12.95□□□□□ -0.34
CHMP1A-204ENST00000547687 IGKV1-17P01599 117 aa12.95□□□□□ -0.34
CHMP1A-204ENST00000547687 CDX1P47902 265 aaPredicted RBP12.95□□□□□ -0.34
CHMP1A-204ENST00000547687 RANP62826 216 aaKnown RBP12.95□□□□□ -0.34
CHMP1A-204ENST00000547687 NDPQ00604 133 aa12.95□□□□□ -0.34
CHMP1A-204ENST00000547687 SPATA3Q8NHX4 192 aa12.95□□□□□ -0.34
CHMP1A-204ENST00000547687 ESM1Q9NQ30 184 aa12.95□□□□□ -0.34
CHMP1A-204ENST00000547687 NBEAP1P0C6P0 100 aa12.95□□□□□ -0.34
CHMP1A-204ENST00000547687 TAS2R60P59551 318 aa12.95□□□□□ -0.34
CHMP1A-204ENST00000547687 ERVFC1-1P60608 527 aa12.95□□□□□ -0.34
CHMP1A-204ENST00000547687 ZNF418Q8TF45 676 aaPredicted RBP12.95□□□□□ -0.34
CHMP1A-204ENST00000547687 BLNKQ8WV28 456 aa12.95□□□□□ -0.34
CHMP1A-204ENST00000547687 TCEAL7Q9BRU2 100 aa12.95□□□□□ -0.34
CHMP1A-204ENST00000547687 IGLV11-55A0A075B6I3 123 aa12.94□□□□□ -0.34
CHMP1A-204ENST00000547687 SLC17A3O00476 420 aa12.94□□□□□ -0.34
CHMP1A-204ENST00000547687 MYCNOSP40205 109 aa12.94□□□□□ -0.34
CHMP1A-204ENST00000547687 LEMD1Q68G75 181 aa12.94□□□□□ -0.34
CHMP1A-204ENST00000547687 TMEM219Q86XT9 240 aa12.94□□□□□ -0.34
CHMP1A-204ENST00000547687 SIGLECL1Q8N7X8 197 aa12.94□□□□□ -0.34
CHMP1A-204ENST00000547687 IGF2BP2-AS1Q96M15 143 aa12.94□□□□□ -0.34
CHMP1A-204ENST00000547687 FANCD2OSQ96PS1 177 aa12.94□□□□□ -0.34
CHMP1A-204ENST00000547687 IL36BQ9NZH7 164 aa12.94□□□□□ -0.34
CHMP1A-204ENST00000547687 IGHV7-81A0A0B4J1V7 117 aa12.93□□□□□ -0.34
CHMP1A-204ENST00000547687 PEX7O00628 323 aa12.93□□□□□ -0.34
CHMP1A-204ENST00000547687 GCGP01275 180 aa12.93□□□□□ -0.34
CHMP1A-204ENST00000547687 GP9P14770 177 aa12.93□□□□□ -0.34
CHMP1A-204ENST00000547687 CNN1P51911 297 aaKnown RBP12.93□□□□□ -0.34
CHMP1A-204ENST00000547687 LINC00479Q96M42 142 aa12.93□□□□□ -0.34
CHMP1A-204ENST00000547687 SLC25A39Q9BZJ4 359 aaPredicted RBP12.93□□□□□ -0.34
CHMP1A-204ENST00000547687 MRPL27Q9P0M9 148 aaKnown RBP12.93□□□□□ -0.34
CHMP1A-204ENST00000547687 IGLV2-8P01709 118 aa12.93□□□□□ -0.34
CHMP1A-204ENST00000547687 S100A9P06702 114 aaKnown RBP12.93□□□□□ -0.34
CHMP1A-204ENST00000547687 ACTL10Q5JWF8 245 aa12.93□□□□□ -0.34
CHMP1A-204ENST00000547687 TEX29Q8N6K0 151 aa12.93□□□□□ -0.34
CHMP1A-204ENST00000547687 ZNF48Q96MX3 618 aaPredicted RBP12.93□□□□□ -0.34
CHMP1A-204ENST00000547687 HSPB9Q9BQS6 159 aa12.93□□□□□ -0.34
CHMP1A-204ENST00000547687 PGPA6NDG6 321 aa12.92□□□□□ -0.34
CHMP1A-204ENST00000547687 HLA-DRB1P01911 266 aa12.92□□□□□ -0.34
CHMP1A-204ENST00000547687 EGR2P11161 476 aaPredicted RBP12.92□□□□□ -0.34
CHMP1A-204ENST00000547687 MFAP4P55083 255 aa12.92□□□□□ -0.34
CHMP1A-204ENST00000547687 HILS1P60008 231 aa12.92□□□□□ -0.34
CHMP1A-204ENST00000547687 SCGB2A2Q13296 93 aa12.92□□□□□ -0.34
CHMP1A-204ENST00000547687 S4R3C0 116 aa12.92□□□□□ -0.34
CHMP1A-204ENST00000547687 V9GYV3 84 aa12.92□□□□□ -0.34
CHMP1A-204ENST00000547687 TRAV30A0A087WSZ9 112 aa12.91□□□□□ -0.34
CHMP1A-204ENST00000547687 H3BUX3 64 aa12.91□□□□□ -0.34
CHMP1A-204ENST00000547687 TOMM40O96008 361 aa12.91□□□□□ -0.34
CHMP1A-204ENST00000547687 SLC25A5P05141 298 aaKnown RBP12.91□□□□□ -0.34
CHMP1A-204ENST00000547687 MGST1P10620 155 aaKnown RBP12.91□□□□□ -0.34
CHMP1A-204ENST00000547687 GSN-AS1Q9NRJ2 163 aa12.91□□□□□ -0.34
CHMP1A-204ENST00000547687 OSTCQ9NRP0 149 aa12.91□□□□□ -0.34
CHMP1A-204ENST00000547687 THYN1Q9P016 225 aa12.91□□□□□ -0.34
CHMP1A-204ENST00000547687 EPDR1Q9UM22 224 aa12.91□□□□□ -0.34
CHMP1A-204ENST00000547687 SH2D7A6NKC9 451 aaPredicted RBP12.91□□□□□ -0.34
CHMP1A-204ENST00000547687 IFITM10A6NMD0 228 aa12.91□□□□□ -0.34
CHMP1A-204ENST00000547687 GNG7O60262 68 aa12.91□□□□□ -0.34
CHMP1A-204ENST00000547687 SMIM6P0DI80 62 aa12.91□□□□□ -0.34
CHMP1A-204ENST00000547687 GFI1BQ5VTD9 330 aa12.91□□□□□ -0.34
CHMP1A-204ENST00000547687 C5orf56Q8N8D9 126 aa12.91□□□□□ -0.34
CHMP1A-204ENST00000547687 RNASE7Q9H1E1 156 aaKnown RBP12.91□□□□□ -0.34
CHMP1A-204ENST00000547687 TMEM14CQ9P0S9 112 aa12.91□□□□□ -0.34
CHMP1A-204ENST00000547687 TRAV9-1A0A075B6T8 112 aa12.9□□□□□ -0.34
CHMP1A-204ENST00000547687 TRAV34A0A0B4J273 112 aa12.9□□□□□ -0.34
CHMP1A-204ENST00000547687 ISLRO14498 428 aa12.9□□□□□ -0.34
CHMP1A-204ENST00000547687 RPL15P61313 204 aaKnown RBP12.9□□□□□ -0.34
CHMP1A-204ENST00000547687 GNG5P63218 68 aa12.9□□□□□ -0.34
CHMP1A-204ENST00000547687 LY6EQ16553 131 aa12.9□□□□□ -0.34
CHMP1A-204ENST00000547687 RPEL1Q2QD12 228 aa12.9□□□□□ -0.34
CHMP1A-204ENST00000547687 ZNF491Q8N8L2 437 aa12.9□□□□□ -0.34
CHMP1A-204ENST00000547687 PITPNC1Q9UKF7 332 aa12.9□□□□□ -0.34
CHMP1A-204ENST00000547687 NDUFB8O95169 186 aa12.89□□□□□ -0.35
CHMP1A-204ENST00000547687 YPEL3P61236 119 aaPredicted RBP12.89□□□□□ -0.35
CHMP1A-204ENST00000547687 BAGE2Q86Y30 109 aa12.89□□□□□ -0.35
CHMP1A-204ENST00000547687 HIST3H2BBQ8N257 126 aa12.89□□□□□ -0.35
CHMP1A-204ENST00000547687 MOB4Q9Y3A3 225 aa12.89□□□□□ -0.35
CHMP1A-204ENST00000547687 TRAPPC1Q9Y5R8 145 aa12.89□□□□□ -0.35
CHMP1A-204ENST00000547687 H3BTX0 84 aa12.89□□□□□ -0.35
CHMP1A-204ENST00000547687 HIST1H1BP16401 226 aaKnown RBP12.89□□□□□ -0.35
CHMP1A-204ENST00000547687 Q56UQ5 140 aa12.89□□□□□ -0.35
CHMP1A-204ENST00000547687 NHLRC2Q8NBF2 726 aa12.89□□□□□ -0.35
CHMP1A-204ENST00000547687 TMEM68Q96MH6 324 aa12.89□□□□□ -0.35
CHMP1A-204ENST00000547687 SHANK2-AS3Q9BTD1 123 aa12.89□□□□□ -0.35
CHMP1A-204ENST00000547687 GAR1Q9NY12 217 aaKnown RBP12.89□□□□□ -0.35
CHMP1A-204ENST00000547687 C21orf62Q9NYP8 219 aa12.89□□□□□ -0.35
CHMP1A-204ENST00000547687 WI2-2373I1.2A0A1W2PRP0 233 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms