RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 OR5AN1Q8NGI8 311 aa11.61□□□□□ -0.55
LIMS1-215ENST00000544547 NEUROG1Q92886 237 aa11.61□□□□□ -0.55
LIMS1-215ENST00000544547 SMKR1H3BMG3 65 aa11.61□□□□□ -0.55
LIMS1-215ENST00000544547 M0R3E3 92 aa11.61□□□□□ -0.55
LIMS1-215ENST00000544547 LINC01560Q8TB33 94 aa11.61□□□□□ -0.55
LIMS1-215ENST00000544547 ANAPC13Q9BS18 74 aa11.61□□□□□ -0.55
LIMS1-215ENST00000544547 H3BRM9 83 aa11.61□□□□□ -0.55
LIMS1-215ENST00000544547 ID1P41134 155 aa11.61□□□□□ -0.55
LIMS1-215ENST00000544547 MFAP4P55083 255 aa11.61□□□□□ -0.55
LIMS1-215ENST00000544547 COLCA1Q6ZS62 124 aa11.61□□□□□ -0.55
LIMS1-215ENST00000544547 TCRBV4S1A1TA0A5B7 111 aa11.6□□□□□ -0.55
LIMS1-215ENST00000544547 K7EP34 96 aa11.6□□□□□ -0.55
LIMS1-215ENST00000544547 SMAD7O15105 426 aaKnown RBP11.6□□□□□ -0.55
LIMS1-215ENST00000544547 ARMS2P0C7Q2 107 aa11.6□□□□□ -0.55
LIMS1-215ENST00000544547 C11orf52Q96A22 123 aa11.6□□□□□ -0.55
LIMS1-215ENST00000544547 IQCF6A8MYZ5 107 aa11.6□□□□□ -0.55
LIMS1-215ENST00000544547 COX8AP10176 69 aa11.6□□□□□ -0.55
LIMS1-215ENST00000544547 RAB9AP51151 201 aa11.6□□□□□ -0.55
LIMS1-215ENST00000544547 CDH23Q9H251 3354 aa11.6□□□□□ -0.55
LIMS1-215ENST00000544547 IGHV3OR16-13A0A075B7E8 117 aa11.6□□□□□ -0.55
LIMS1-215ENST00000544547 IGHV3-74A0A0B4J1X5 117 aa11.6□□□□□ -0.55
LIMS1-215ENST00000544547 VDAC2P45880 294 aaPredicted RBP11.6□□□□□ -0.55
LIMS1-215ENST00000544547 ATP5J2P56134 94 aa11.6□□□□□ -0.55
LIMS1-215ENST00000544547 METTL26Q96S19 204 aa11.6□□□□□ -0.55
LIMS1-215ENST00000544547 ZNRD1Q9P1U0 126 aa11.6□□□□□ -0.55
LIMS1-215ENST00000544547 MED12LQ86YW9 2145 aa11.6□□□□□ -0.55
LIMS1-215ENST00000544547 KIAA1549Q9HCM3 1950 aa11.6□□□□□ -0.55
LIMS1-215ENST00000544547 TEX48A0A1B0GUV7 120 aa11.59□□□□□ -0.55
LIMS1-215ENST00000544547 K7ERJ3 54 aa11.59□□□□□ -0.55
LIMS1-215ENST00000544547 ZNF883P0CG24 379 aa11.59□□□□□ -0.55
LIMS1-215ENST00000544547 ERVK11-1P61568 191 aa11.59□□□□□ -0.55
LIMS1-215ENST00000544547 IGKV1-16P04430 117 aa11.59□□□□□ -0.55
LIMS1-215ENST00000544547 CCL3L1P16619 93 aa11.59□□□□□ -0.55
LIMS1-215ENST00000544547 AMTNQ6UX39 209 aa11.59□□□□□ -0.55
LIMS1-215ENST00000544547 ZNF329Q86UD4 541 aa11.59□□□□□ -0.55
LIMS1-215ENST00000544547 CD177Q8N6Q3 437 aa11.59□□□□□ -0.55
LIMS1-215ENST00000544547 TNFRSF14Q92956 283 aa11.59□□□□□ -0.55
LIMS1-215ENST00000544547 AMN1Q8IY45 258 aa11.59□□□□□ -0.55
LIMS1-215ENST00000544547 MED13Q9UHV7 2174 aa11.59□□□□□ -0.55
LIMS1-215ENST00000544547 TCRAP04437 139 aa11.58□□□□□ -0.55
LIMS1-215ENST00000544547 IGHV1-2P23083 117 aa11.58□□□□□ -0.55
LIMS1-215ENST00000544547 CFHR2P36980 270 aa11.58□□□□□ -0.55
LIMS1-215ENST00000544547 OR10J6PQ8NGY7 276 aa11.58□□□□□ -0.55
LIMS1-215ENST00000544547 DYSFO75923 2080 aa11.58□□□□□ -0.55
LIMS1-215ENST00000544547 ATP5IP56385 69 aaPredicted RBP11.58□□□□□ -0.56
LIMS1-215ENST00000544547 LY6EQ16553 131 aa11.58□□□□□ -0.56
LIMS1-215ENST00000544547 WDR86Q86TI4 376 aa11.58□□□□□ -0.56
LIMS1-215ENST00000544547 OSR1Q8TAX0 266 aaPredicted RBP11.58□□□□□ -0.56
LIMS1-215ENST00000544547 PPBPP02775 128 aa11.58□□□□□ -0.56
LIMS1-215ENST00000544547 FOXA2Q9Y261 457 aaPredicted RBP11.58□□□□□ -0.56
LIMS1-215ENST00000544547 PMS2P5A8MQ11 134 aa11.58□□□□□ -0.56
LIMS1-215ENST00000544547 CRXO43186 299 aaPredicted RBP11.58□□□□□ -0.56
LIMS1-215ENST00000544547 COX6B1P14854 86 aa11.58□□□□□ -0.56
LIMS1-215ENST00000544547 COL8A2P25067 703 aa11.58□□□□□ -0.56
LIMS1-215ENST00000544547 ZC2HC1BQ5TFG8 222 aa11.58□□□□□ -0.56
LIMS1-215ENST00000544547 PSG8Q9UQ74 426 aa11.58□□□□□ -0.56
LIMS1-215ENST00000544547 LTBP2Q14767 1821 aa11.57□□□□□ -0.56
LIMS1-215ENST00000544547 GAGE12HA6NDE8 117 aa11.57□□□□□ -0.56
LIMS1-215ENST00000544547 B9A039 149 aa11.57□□□□□ -0.56
LIMS1-215ENST00000544547 SPINK8P0C7L1 97 aa11.57□□□□□ -0.56
LIMS1-215ENST00000544547 IGKV3D-15A0A087WSY6 115 aa11.57□□□□□ -0.56
LIMS1-215ENST00000544547 LY6G6EA0A0G2JKS1 128 aa11.57□□□□□ -0.56
LIMS1-215ENST00000544547 FAM90A9PA6NNJ1 464 aa11.57□□□□□ -0.56
LIMS1-215ENST00000544547 C9orf172C9J069 976 aa11.57□□□□□ -0.56
LIMS1-215ENST00000544547 IGKV3-15P01624 115 aa11.57□□□□□ -0.56
LIMS1-215ENST00000544547 VKORC1Q9BQB6 163 aa11.57□□□□□ -0.56
LIMS1-215ENST00000544547 GEMIN7Q9H840 131 aaKnown RBP11.57□□□□□ -0.56
LIMS1-215ENST00000544547 U3KQA8 63 aa11.57□□□□□ -0.56
LIMS1-215ENST00000544547 A0A1W2PPM0 123 aa11.57□□□□□ -0.56
LIMS1-215ENST00000544547 H0YJW9 148 aa11.57□□□□□ -0.56
LIMS1-215ENST00000544547 RPRMLQ8N4K4 120 aa11.57□□□□□ -0.56
LIMS1-215ENST00000544547 DSCAML1Q8TD84 2053 aa11.57□□□□□ -0.56
LIMS1-215ENST00000544547 SS18L1O75177 396 aaPredicted RBP11.56□□□□□ -0.56
LIMS1-215ENST00000544547 SLC25A48Q6ZT89 311 aaKnown RBP11.56□□□□□ -0.56
LIMS1-215ENST00000544547 ATP6V0BQ99437 205 aa11.56□□□□□ -0.56
LIMS1-215ENST00000544547 MUC6Q6W4X9 2439 aa11.56□□□□□ -0.56
LIMS1-215ENST00000544547 K7EMI3 77 aa11.56□□□□□ -0.56
LIMS1-215ENST00000544547 NTN3O00634 580 aaPredicted RBP11.56□□□□□ -0.56
LIMS1-215ENST00000544547 IGLC1P0CG04 106 aa11.56□□□□□ -0.56
LIMS1-215ENST00000544547 CTRLP40313 264 aa11.56□□□□□ -0.56
LIMS1-215ENST00000544547 IGHV3OR16-10A0A075B7F0 116 aa11.56□□□□□ -0.56
LIMS1-215ENST00000544547 H3BMG7 143 aa11.56□□□□□ -0.56
LIMS1-215ENST00000544547 IGKCP01834 107 aa11.56□□□□□ -0.56
LIMS1-215ENST00000544547 LYZL1Q6UWQ5 148 aa11.56□□□□□ -0.56
LIMS1-215ENST00000544547 CYSLTR1Q9Y271 337 aa11.56□□□□□ -0.56
LIMS1-215ENST00000544547 ADAMTS9Q9P2N4 1935 aa11.56□□□□□ -0.56
LIMS1-215ENST00000544547 PRSS2P07478 247 aa11.56□□□□□ -0.56
LIMS1-215ENST00000544547 ABHD17AQ96GS6 310 aa11.56□□□□□ -0.56
LIMS1-215ENST00000544547 NPIPB5A8MRT5 1133 aa11.55□□□□□ -0.56
LIMS1-215ENST00000544547 DPM2O94777 84 aa11.55□□□□□ -0.56
LIMS1-215ENST00000544547 TMEM30BQ3MIR4 351 aa11.55□□□□□ -0.56
LIMS1-215ENST00000544547 TEX29Q8N6K0 151 aa11.55□□□□□ -0.56
LIMS1-215ENST00000544547 CHAC1Q9BUX1 264 aa11.55□□□□□ -0.56
LIMS1-215ENST00000544547 TRAV8-2A0A0B4J237 113 aa11.55□□□□□ -0.56
LIMS1-215ENST00000544547 IGHV3-23P01764 117 aa11.55□□□□□ -0.56
LIMS1-215ENST00000544547 APOBEC3AP31941 199 aaPredicted RBP11.55□□□□□ -0.56
LIMS1-215ENST00000544547 ARPC1AQ92747 370 aa11.55□□□□□ -0.56
LIMS1-215ENST00000544547 FBXL15Q9H469 300 aa11.55□□□□□ -0.56
LIMS1-215ENST00000544547 IGLV2-14P01704 120 aa11.55□□□□□ -0.56
LIMS1-215ENST00000544547 SH2D6Q7Z4S9 175 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms