RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	PDE6H	Q13956	83 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	EIF5AL1	Q6IS14	154 aa	Known RBP	0.83	□□□□□ -2.28
CD44-238	ENST00000534296	CROCCP2	Q86T23	111 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	ST6GALNAC3	Q8NDV1	305 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	OR11H6	Q8NGC7	330 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	OR52L1	Q8NGH7	329 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	OR10X1	Q8NGY0	326 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	SLAMF6	Q96DU3	332 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	GPER1	Q99527	375 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	PRADC1	Q9BSG0	188 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	TMEM70	Q9BUB7	260 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	LY96	Q9Y6Y9	160 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	MEGF8	Q7Z7M0	2845 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	SPTBN5	Q9NRC6	3674 aa	Known RBP	0.83	□□□□□ -2.28
CD44-238	ENST00000534296	SYNE2	Q8WXH0	6885 aa	Known RBP	0.83	□□□□□ -2.28
CD44-238	ENST00000534296	CSMD1	Q96PZ7	3565 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	MXRA5	Q9NR99	2828 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	TRBV19	A0A075B6N1	114 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	NDUFB3	O43676	98 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	TIMM17B	O60830	172 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	GGCT	O75223	188 aa	Known RBP	0.82	□□□□□ -2.28
CD44-238	ENST00000534296	GADD45G	O95257	159 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	DNAL4	O96015	105 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	RNASE3	P12724	160 aa	Known RBP	0.82	□□□□□ -2.28
CD44-238	ENST00000534296	TAF1A	Q15573	450 aa	Predicted RBP	0.82	□□□□□ -2.28
CD44-238	ENST00000534296	MPV17L	Q2QL34	196 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	SCGB2B2	Q4G0G5	96 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	GDF5OS	Q5U4N7	250 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	OR52R1	Q8NGF1	315 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	CANT1	Q8WVQ1	401 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	DGCR14	Q96DF8	476 aa	Known RBP	0.82	□□□□□ -2.28
CD44-238	ENST00000534296	SLC25A21	Q9BQT8	299 aa	Predicted RBP	0.82	□□□□□ -2.28
CD44-238	ENST00000534296	RNF122	Q9H9V4	155 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	PARVB	Q9HBI1	364 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	CDC42SE1	Q9NRR8	79 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	TMEM14C	Q9P0S9	112 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	ZFP30	Q9Y2G7	519 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	ARL5A	Q9Y689	179 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	MCM3AP	O60318	1980 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	SCN8A	Q9UQD0	1980 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	NBEA	Q8NFP9	2946 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	C5orf42	Q9H799	3197 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	RELN	P78509	3460 aa		0.82	□□□□□ -2.28
CD44-238	ENST00000534296	FMN1	Q68DA7	1419 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	COL24A1	Q17RW2	1714 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	POLE	Q07864	2286 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	SCN3A	Q9NY46	2000 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	NEB	P20929	6669 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	FLG2	Q5D862	2391 aa	Predicted RBP	0.81	□□□□□ -2.28
CD44-238	ENST00000534296	TCRBV4S1A1T	A0A5B7	111 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	FAM159B	A6NKW6	160 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296		A8MWV9	139 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296		G3V2T6	193 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	BANF1	O75531	89 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	LYZL6	O75951	148 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	DHFR	P00374	187 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	APOA2	P02652	100 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	CST2	P09228	141 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	DYNLT1	P63172	113 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	RRN3P1	Q2M238	152 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	C22orf39	Q6P5X5	142 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	C4orf22	Q6V702	233 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	GOLT1A	Q6ZVE7	132 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	C3orf56	Q8N813	242 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	WFDC5	Q8TCV5	224 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	ZNF418	Q8TF45	676 aa	Predicted RBP	0.81	□□□□□ -2.28
CD44-238	ENST00000534296	PATE1	Q8WXA2	126 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	ZNF714	Q96N38	554 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	TP53RK	Q96S44	253 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	STOML2	Q9UJZ1	356 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	C22orf24	Q9Y442	160 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	DLG5	Q8TDM6	1919 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	MGAM2	Q2M2H8	2515 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	BSN	Q9UPA5	3926 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	TENM3	Q9P273	2699 aa		0.81	□□□□□ -2.28
CD44-238	ENST00000534296	CFAP54	Q96N23	3096 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	IGF2R	P11717	2491 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	TECTA	O75443	2155 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	KDM5C	P41229	1560 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	CELSR1	Q9NYQ6	3014 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	ROS1	P08922	2347 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	UTRN	P46939	3433 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	LOC110117498	A0A087WWA1	95 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	ZNF736	B4DX44	427 aa	Predicted RBP	0.8	□□□□□ -2.28
CD44-238	ENST00000534296	HSD11B1	P28845	292 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	SERPINB9	P50453	376 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	UBE2B	P63146	152 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	C1orf137	Q5JT78	98 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	AKR1C8P	Q5T2L2	129 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	SOSTDC1	Q6X4U4	206 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	TEN1	Q86WV5	123 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	GKN2	Q86XP6	184 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	OR5D14	Q8NGL3	314 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	PBDC1	Q9BVG4	233 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	PYCARD	Q9ULZ3	195 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	FAM186A	A6NE01	2351 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	SPTA1	P02549	2419 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	ASPM	Q8IZT6	3477 aa		0.8	□□□□□ -2.28
CD44-238	ENST00000534296	ZFHX3	Q15911	3703 aa		0.79	□□□□□ -2.28
CD44-238	ENST00000534296	MUC3A	Q02505	3323 aa		0.79	□□□□□ -2.28

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