RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 IGLV2-11P01706 119 aa16.78■□□□□ 0.28
VPS28-205ENST00000526204 COL8A1P27658 744 aa16.78■□□□□ 0.28
VPS28-205ENST00000526204 ADORA2A-AS1P86434 159 aa16.78■□□□□ 0.28
VPS28-205ENST00000526204 C5orf64Q2M2E5 130 aa16.78■□□□□ 0.28
VPS28-205ENST00000526204 ZNF491Q8N8L2 437 aa16.78■□□□□ 0.28
VPS28-205ENST00000526204 RNF125Q96EQ8 232 aa16.78■□□□□ 0.28
VPS28-205ENST00000526204 PGLYRP4Q96LB8 373 aa16.78■□□□□ 0.28
VPS28-205ENST00000526204 K7EQM0 130 aa16.77■□□□□ 0.28
VPS28-205ENST00000526204 C11orf71Q6IPW1 123 aa16.77■□□□□ 0.28
VPS28-205ENST00000526204 C1orf122Q6ZSJ8 110 aa16.77■□□□□ 0.28
VPS28-205ENST00000526204 PRNTQ86SH4 94 aa16.77■□□□□ 0.28
VPS28-205ENST00000526204 TMEM75Q8N9X5 138 aa16.77■□□□□ 0.28
VPS28-205ENST00000526204 ZFP30Q9Y2G7 519 aa16.77■□□□□ 0.28
VPS28-205ENST00000526204 SPTBN4Q9H254 2564 aa16.77■□□□□ 0.27
VPS28-205ENST00000526204 TRAV8-1A0A0A6YYK1 113 aa16.76■□□□□ 0.27
VPS28-205ENST00000526204 TCAPO15273 167 aa16.76■□□□□ 0.27
VPS28-205ENST00000526204 IGLC2P0DOY2 106 aa16.76■□□□□ 0.27
VPS28-205ENST00000526204 CTRLP40313 264 aa16.76■□□□□ 0.27
VPS28-205ENST00000526204 HES1Q14469 280 aa16.76■□□□□ 0.27
VPS28-205ENST00000526204 CCDC144NLQ6NUI1 221 aa16.76■□□□□ 0.27
VPS28-205ENST00000526204 WI2-2373I1.2A0A1W2PRP0 233 aa16.76■□□□□ 0.27
VPS28-205ENST00000526204 A6NNC1 897 aa16.76■□□□□ 0.27
VPS28-205ENST00000526204 NPIPB5A8MRT5 1133 aa16.76■□□□□ 0.27
VPS28-205ENST00000526204 M0R2Z0 102 aa16.76■□□□□ 0.27
VPS28-205ENST00000526204 ZNF48Q96MX3 618 aaPredicted RBP16.76■□□□□ 0.27
VPS28-205ENST00000526204 TLN1Q9Y490 2541 aaKnown RBP16.76■□□□□ 0.27
VPS28-205ENST00000526204 IL4P05112 153 aa16.75■□□□□ 0.27
VPS28-205ENST00000526204 KLRD1Q13241 179 aa16.75■□□□□ 0.27
VPS28-205ENST00000526204 CDSNQ15517 529 aa16.75■□□□□ 0.27
VPS28-205ENST00000526204 PMCHL1Q16048 86 aa16.75■□□□□ 0.27
VPS28-205ENST00000526204 SPATA45Q537H7 98 aa16.75■□□□□ 0.27
VPS28-205ENST00000526204 RNASEKQ6P5S7 137 aaKnown RBP16.75■□□□□ 0.27
VPS28-205ENST00000526204 ZNF562Q6V9R5 426 aa16.75■□□□□ 0.27
VPS28-205ENST00000526204 CIARTQ8N365 385 aaPredicted RBP16.75■□□□□ 0.27
VPS28-205ENST00000526204 OOSP1A8MZH6 123 aa16.75■□□□□ 0.27
VPS28-205ENST00000526204 C16orf54Q6UWD8 224 aa16.75■□□□□ 0.27
VPS28-205ENST00000526204 SIGLEC15Q6ZMC9 328 aa16.75■□□□□ 0.27
VPS28-205ENST00000526204 FAM181BA6NEQ2 426 aa16.74■□□□□ 0.27
VPS28-205ENST00000526204 GNG7O60262 68 aa16.74■□□□□ 0.27
VPS28-205ENST00000526204 HLA-DRB1P01911 266 aa16.74■□□□□ 0.27
VPS28-205ENST00000526204 MFAP4P55083 255 aa16.74■□□□□ 0.27
VPS28-205ENST00000526204 FOXA3P55318 350 aaPredicted RBP16.74■□□□□ 0.27
VPS28-205ENST00000526204 PTPRQQ9UMZ3 2332 aa16.74■□□□□ 0.27
VPS28-205ENST00000526204 ANKHD1Q8IWZ3 2542 aaKnown RBP16.73■□□□□ 0.27
VPS28-205ENST00000526204 IGLV11-55A0A075B6I3 123 aa16.73■□□□□ 0.27
VPS28-205ENST00000526204 HAX1O00165 279 aa16.73■□□□□ 0.27
VPS28-205ENST00000526204 CD24P25063 80 aa16.73■□□□□ 0.27
VPS28-205ENST00000526204 KIR3DL3Q8N743 410 aa16.73■□□□□ 0.27
VPS28-205ENST00000526204 KLHDC1Q8N7A1 406 aa16.73■□□□□ 0.27
VPS28-205ENST00000526204 TOX4O94842 621 aa16.72■□□□□ 0.27
VPS28-205ENST00000526204 BTF3P20290 206 aaKnown RBP16.72■□□□□ 0.27
VPS28-205ENST00000526204 PDE6HQ13956 83 aa16.72■□□□□ 0.27
VPS28-205ENST00000526204 ARPC1AQ92747 370 aa16.72■□□□□ 0.27
VPS28-205ENST00000526204 CHCHD1Q96BP2 118 aaKnown RBP16.72■□□□□ 0.27
VPS28-205ENST00000526204 ZNF414Q96IQ9 312 aa16.72■□□□□ 0.27
VPS28-205ENST00000526204 FANCD2OSQ96PS1 177 aa16.72■□□□□ 0.27
VPS28-205ENST00000526204 NDFIP1Q9BT67 221 aa16.72■□□□□ 0.27
VPS28-205ENST00000526204 RAXQ9Y2V3 346 aa16.72■□□□□ 0.27
VPS28-205ENST00000526204 CHEK1O14757 476 aa16.72■□□□□ 0.27
VPS28-205ENST00000526204 MRPS12O15235 138 aaKnown RBP16.72■□□□□ 0.27
VPS28-205ENST00000526204 FCGR2BP31994 310 aaPredicted RBP16.72■□□□□ 0.27
VPS28-205ENST00000526204 PSG3Q16557 428 aa16.72■□□□□ 0.27
VPS28-205ENST00000526204 TTC9CQ8N5M4 171 aa16.72■□□□□ 0.27
VPS28-205ENST00000526204 C17orf77Q96MU5 243 aa16.72■□□□□ 0.27
VPS28-205ENST00000526204 THYN1Q9P016 225 aa16.72■□□□□ 0.27
VPS28-205ENST00000526204 UQCR10Q9UDW1 63 aa16.72■□□□□ 0.27
VPS28-205ENST00000526204 KLF17Q5JT82 389 aaPredicted RBP16.71■□□□□ 0.27
VPS28-205ENST00000526204 MINOS1Q5TGZ0 78 aa16.71■□□□□ 0.27
VPS28-205ENST00000526204 PSG8Q9UQ74 426 aa16.71■□□□□ 0.27
VPS28-205ENST00000526204 MINOS1-NBL1R4GNA1 71 aa16.71■□□□□ 0.27
VPS28-205ENST00000526204 RPLP1P05386 114 aaKnown RBP16.7■□□□□ 0.26
VPS28-205ENST00000526204 CYB5R2Q6BCY4 276 aa16.7■□□□□ 0.26
VPS28-205ENST00000526204 VMO1Q7Z5L0 202 aa16.7■□□□□ 0.26
VPS28-205ENST00000526204 DTX2Q86UW9 622 aa16.7■□□□□ 0.26
VPS28-205ENST00000526204 ZC2HC1AQ96GY0 325 aa16.7■□□□□ 0.26
VPS28-205ENST00000526204 IGF2RP11717 2491 aa16.69■□□□□ 0.26
VPS28-205ENST00000526204 LOC102724200A0A096LPH7 203 aaPredicted RBP16.69■□□□□ 0.26
VPS28-205ENST00000526204 NCBP2LA6PVI3 153 aaKnown RBP16.69■□□□□ 0.26
VPS28-205ENST00000526204 SCGB2A1O75556 95 aa16.69■□□□□ 0.26
VPS28-205ENST00000526204 APOHP02749 345 aaPredicted RBP16.69■□□□□ 0.26
VPS28-205ENST00000526204 IGLC3P0DOY3 106 aa16.69■□□□□ 0.26
VPS28-205ENST00000526204 EBI3Q14213 229 aa16.69■□□□□ 0.26
VPS28-205ENST00000526204 DMRTA1Q5VZB9 504 aa16.69■□□□□ 0.26
VPS28-205ENST00000526204 EBLN2Q6P2I7 272 aa16.69■□□□□ 0.26
VPS28-205ENST00000526204 AAMDCQ9H7C9 122 aa16.69■□□□□ 0.26
VPS28-205ENST00000526204 ZZEF1O43149 2961 aa16.69■□□□□ 0.26
VPS28-205ENST00000526204 A0A1W2PRD5 423 aa16.69■□□□□ 0.26
VPS28-205ENST00000526204 A0A1W2PRF3 423 aa16.69■□□□□ 0.26
VPS28-205ENST00000526204 A0A1W2PRM7 423 aa16.69■□□□□ 0.26
VPS28-205ENST00000526204 Q8N6K4 173 aa16.69■□□□□ 0.26
VPS28-205ENST00000526204 URB1-AS1Q96HZ7 61 aa16.69■□□□□ 0.26
VPS28-205ENST00000526204 C21orf62Q9NYP8 219 aa16.69■□□□□ 0.26
VPS28-205ENST00000526204 A0A1B0GUT8 65 aa16.68■□□□□ 0.26
VPS28-205ENST00000526204 A0A1B0GW15 77 aa16.68■□□□□ 0.26
VPS28-205ENST00000526204 SERTM2A0A1B0GWG4 89 aa16.68■□□□□ 0.26
VPS28-205ENST00000526204 C20orf202A1L168 122 aa16.68■□□□□ 0.26
VPS28-205ENST00000526204 C2orf70A6NJV1 201 aa16.68■□□□□ 0.26
VPS28-205ENST00000526204 ZNF785A8K8V0 405 aa16.68■□□□□ 0.26
VPS28-205ENST00000526204 Q56UQ5 140 aa16.68■□□□□ 0.26
VPS28-205ENST00000526204 IGFBPL1Q8WX77 278 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms