RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 KLF5Q13887 457 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 FOXI2Q6ZQN5 318 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 Q71RC1 249 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 GFI1Q99684 422 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 SHANK2-AS3Q9BTD1 123 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 A0A0A6YYD4 124 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 GAS1P54826 345 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 HERVK_113P63121 156 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 EVPLQ92817 2033 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 TEX48A0A1B0GUV7 120 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 A0A1B0GX51 115 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 LINC01565O15544 149 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 ARMS2P0C7Q2 107 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 PSMB8P28062 276 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 ZNF474Q6S9Z5 364 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 LAMB1P07942 1786 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 A0A1W2PR77 199 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 C15orf62A8K5M9 175 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 HERV-K104P63124 156 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 MRPL23Q16540 153 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 SLX1AQ9BQ83 275 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 S4R3C0 116 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 A0A1W2PPI3 338 aa9.16□□□□□ -0.94
LIMCH1-217ENST00000512946 RNF166Q96A37 237 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-217ENST00000512946 HS3ST6Q96QI5 342 aa9.16□□□□□ -0.94
LIMCH1-217ENST00000512946 NRTNQ99748 197 aa9.16□□□□□ -0.94
LIMCH1-217ENST00000512946 HIGD1BQ9P298 99 aa9.16□□□□□ -0.94
LIMCH1-217ENST00000512946 NTF4P34130 210 aa9.16□□□□□ -0.94
LIMCH1-217ENST00000512946 TNRC6CQ9HCJ0 1690 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-217ENST00000512946 H3BT86 120 aa9.16□□□□□ -0.94
LIMCH1-217ENST00000512946 CCL25O15444 150 aa9.16□□□□□ -0.94
LIMCH1-217ENST00000512946 BAALC-AS2P0C853 105 aa9.16□□□□□ -0.94
LIMCH1-217ENST00000512946 CHCHD2Q9Y6H1 151 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-217ENST00000512946 HTN3P15516 51 aa9.16□□□□□ -0.94
LIMCH1-217ENST00000512946 DDX60Q8IY21 1712 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-217ENST00000512946 NUP98P52948 1817 aa9.16□□□□□ -0.94
LIMCH1-217ENST00000512946 IGKV1D-43A0A0B4J1Z2 117 aa9.15□□□□□ -0.94
LIMCH1-217ENST00000512946 TRPM6Q9BX84 2022 aa9.15□□□□□ -0.94
LIMCH1-217ENST00000512946 IGKV1D-8A0A087WSZ0 117 aa9.15□□□□□ -0.94
LIMCH1-217ENST00000512946 IGHV1-69DA0A0B4J2H0 117 aa9.15□□□□□ -0.94
LIMCH1-217ENST00000512946 FAM223BA6NKX1 122 aa9.15□□□□□ -0.94
LIMCH1-217ENST00000512946 SRRM5B3KS81 715 aa9.15□□□□□ -0.94
LIMCH1-217ENST00000512946 CRYGSP22914 178 aa9.15□□□□□ -0.94
LIMCH1-217ENST00000512946 FAM223AQ8IWN6 122 aa9.15□□□□□ -0.94
LIMCH1-217ENST00000512946 SVIPQ8NHG7 77 aa9.15□□□□□ -0.94
LIMCH1-217ENST00000512946 SMIM2Q9BVW6 85 aa9.15□□□□□ -0.94
LIMCH1-217ENST00000512946 C5orf67F2Z3F1 127 aa9.15□□□□□ -0.94
LIMCH1-217ENST00000512946 V9GYV3 84 aa9.15□□□□□ -0.94
LIMCH1-217ENST00000512946 SMCHD1A6NHR9 2005 aa9.15□□□□□ -0.95
LIMCH1-217ENST00000512946 JMJD7-PLA2G4BH0Y9G9 81 aa9.15□□□□□ -0.95
LIMCH1-217ENST00000512946 FUSP35637 526 aaKnown RBP eCLIP9.15□□□□□ -0.95
LIMCH1-217ENST00000512946 IGLL5B9A064 214 aa9.14□□□□□ -0.95
LIMCH1-217ENST00000512946 IGLC1P0CG04 106 aa9.14□□□□□ -0.95
LIMCH1-217ENST00000512946 CEACAM8P31997 349 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-217ENST00000512946 SCRT2Q9NQ03 307 aa9.14□□□□□ -0.95
LIMCH1-217ENST00000512946 TUBGCP6Q96RT7 1819 aa9.14□□□□□ -0.95
LIMCH1-217ENST00000512946 COL22A1Q8NFW1 1626 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-217ENST00000512946 PDE6GP18545 87 aa9.14□□□□□ -0.95
LIMCH1-217ENST00000512946 LYZL4Q96KX0 146 aa9.14□□□□□ -0.95
LIMCH1-217ENST00000512946 NKAPP1Q8N9T2 125 aa9.14□□□□□ -0.95
LIMCH1-217ENST00000512946 MRPL35Q9NZE8 188 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-217ENST00000512946 RHOHQ15669 191 aa9.14□□□□□ -0.95
LIMCH1-217ENST00000512946 COLCA1Q6ZS62 124 aa9.14□□□□□ -0.95
LIMCH1-217ENST00000512946 ZCCHC24Q8N2G6 241 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-217ENST00000512946 TMEM14CQ9P0S9 112 aa9.14□□□□□ -0.95
LIMCH1-217ENST00000512946 XIRP1Q702N8 1843 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-217ENST00000512946 FAM236AA0A1B0GUQ0 79 aa9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 FAM236BA0A1B0GV22 79 aa9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 FAM240AA0A1B0GVK7 77 aa9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 C4orf51C9J302 202 aa9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 PNRC2Q9NPJ4 139 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 PKIGQ9Y2B9 76 aa9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 ANKRD31Q8N7Z5 1873 aa9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 DUX4L9Q6RFH8 374 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 RPP25Q9BUL9 199 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 NWD2Q9ULI1 1742 aa9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 TRBV25-1A0A075B6N4 114 aa9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 TRGV1A0A0A0MS02 117 aa9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 LYPD3O95274 346 aa9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 IGHV3-11P01762 117 aa9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 RNASE2P10153 161 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 MRPL51Q4U2R6 128 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 TRAV26-1A0A087WT03 109 aa9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 ZNF493Q6ZR52 646 aa9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 UNC13CQ8NB66 2214 aa9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 ALS2Q96Q42 1657 aa9.13□□□□□ -0.95
LIMCH1-217ENST00000512946 CHKB-CPT1BH3BT56 60 aa9.12□□□□□ -0.95
LIMCH1-217ENST00000512946 CCL3L1P16619 93 aa9.12□□□□□ -0.95
LIMCH1-217ENST00000512946 C15orf32Q32M92 178 aa9.12□□□□□ -0.95
LIMCH1-217ENST00000512946 SPACA3Q8IXA5 215 aa9.12□□□□□ -0.95
LIMCH1-217ENST00000512946 ZNF747Q9BV97 191 aa9.12□□□□□ -0.95
LIMCH1-217ENST00000512946 LRP5O75197 1615 aa9.12□□□□□ -0.95
LIMCH1-217ENST00000512946 C9JQL5 133 aa9.12□□□□□ -0.95
LIMCH1-217ENST00000512946 G3V4G9 280 aa9.12□□□□□ -0.95
LIMCH1-217ENST00000512946 FDCSPQ8NFU4 85 aa9.12□□□□□ -0.95
LIMCH1-217ENST00000512946 PRSS29PA6NIE9 313 aa9.12□□□□□ -0.95
LIMCH1-217ENST00000512946 SMKR1H3BMG3 65 aa9.12□□□□□ -0.95
LIMCH1-217ENST00000512946 FXYD7P58549 80 aa9.12□□□□□ -0.95
LIMCH1-217ENST00000512946 WFDC9Q8NEX5 89 aa9.12□□□□□ -0.95
LIMCH1-217ENST00000512946 TRPM3Q9HCF6 1732 aaPredicted RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms