RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 TMEM238LA0A1B0GVL6 79 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 A6NJY4 79 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 OR11H12B2RN74 326 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 M0R3E3 92 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 ARMS2P0C7Q2 107 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 SSBP2P81877 361 aaPredicted RBP6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 GUSBP1Q15486 140 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 MAJINQ3KP22 176 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 SPRNQ5BIV9 151 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 PSMG4Q5JS54 123 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 ARL17AQ8IVW1 177 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 OR11H1Q8NG94 326 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 OR11H2Q8NH07 326 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 IGLV3-9A0A075B6K5 115 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 NCR2O95944 276 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 PSG3Q16557 428 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 CT83Q5H943 113 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 FXYD5Q96DB9 178 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 A0A0G2JNJ9 132 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 BUB1B-PAK6H3BSN5 160 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 SFTPCP11686 197 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 BRWD1-AS2P59051 145 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 TTC9CQ8N5M4 171 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 JKAMPQ9P055 326 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 Q9UFV3 132 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 ARHGAP21Q5T5U3 1957 aa6.77□□□□□ -1.32
LIMCH1-216ENST00000512820 M0R381 172 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 FRMD6-AS1P0C7T7 363 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 DIAPH2-AS1Q14236 149 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 NAA38Q9BRA0 125 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 TPSG1Q9NRR2 321 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 YLPM1P49750 1951 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 ZNF318Q5VUA4 2279 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 NUP210LQ5VU65 1888 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 SPTBN1Q01082 2364 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 PPBPP02775 128 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 CNTFRP26992 372 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 HSD52Q0P140 79 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 CLEC19AQ6UXS0 136 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 Q6ZS92 163 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 OR2K2Q8NGT1 345 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 CACNA1HO95180 2353 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 FAM231BA6NCW3 169 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 H3BVH4 76 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 PF4V1P10720 104 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 EVI2AP22794 236 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 DLX1P56177 255 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 DDB2Q92466 427 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 SELENOKQ9Y6D0 94 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 TMEM190Q8WZ59 177 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 RNF5Q99942 180 aa6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 NXT2Q9NPJ8 142 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-216ENST00000512820 INTS1Q8N201 2190 aaKnown RBP6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 ACACAQ13085 2346 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 IGHV1-24A0A0C4DH33 117 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 SH2D1AO60880 128 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 IFI27P40305 119 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 TEX36Q5VZQ5 186 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 AMN1Q8IY45 258 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 LYPD1Q8N2G4 141 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 CENPFP49454 3210 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 ID1P41134 155 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 DAZAP2Q15038 168 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 TMEM155Q4W5P6 130 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 OR9G4Q8NGQ1 327 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 OR1N2Q8NGR9 330 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 SHANK2-AS3Q9BTD1 123 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 CD5LO43866 347 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 HTN1P15515 57 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 THAP8Q8NA92 274 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 NHP2Q9NX24 153 aaKnown RBP6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 NDUFA3O95167 84 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 C3orf36Q3SXR2 165 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 ZNF672Q499Z4 452 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 MORN5Q5VZ52 161 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 Q8TAT8 98 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 WIPF2Q8TF74 440 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 SCGB3A1Q96QR1 104 aa6.76□□□□□ -1.33
LIMCH1-216ENST00000512820 BPTFQ12830 3046 aa6.75□□□□□ -1.33
LIMCH1-216ENST00000512820 DPM2O94777 84 aa6.75□□□□□ -1.33
LIMCH1-216ENST00000512820 SPRY4Q9C004 299 aa6.75□□□□□ -1.33
LIMCH1-216ENST00000512820 MEGF9Q9H1U4 602 aa6.75□□□□□ -1.33
LIMCH1-216ENST00000512820 PTPRSQ13332 1948 aa6.75□□□□□ -1.33
LIMCH1-216ENST00000512820 PROP1O75360 226 aa6.75□□□□□ -1.33
LIMCH1-216ENST00000512820 LHBP01229 141 aa6.75□□□□□ -1.33
LIMCH1-216ENST00000512820 IGHV3OR16-10A0A075B7F0 116 aa6.75□□□□□ -1.33
LIMCH1-216ENST00000512820 SMKR1H3BMG3 65 aa6.75□□□□□ -1.33
LIMCH1-216ENST00000512820 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-216ENST00000512820 LOXP28300 417 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-216ENST00000512820 NEU4Q8WWR8 484 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-216ENST00000512820 SLC50A1Q9BRV3 221 aa6.75□□□□□ -1.33
LIMCH1-216ENST00000512820 IGKCP01834 107 aa6.75□□□□□ -1.33
LIMCH1-216ENST00000512820 RHOGP84095 191 aa6.75□□□□□ -1.33
LIMCH1-216ENST00000512820 KLRD1Q13241 179 aa6.75□□□□□ -1.33
LIMCH1-216ENST00000512820 LINC00311Q8N616 119 aa6.75□□□□□ -1.33
LIMCH1-216ENST00000512820 IGKV1OR2-108A0A075B7D4 117 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 TRGV3P03979 118 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 RIPPLY3P57055 190 aa6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 KLF5Q13887 457 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-216ENST00000512820 IGFL4Q6B9Z1 124 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms