RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 PXDNQ92626 1479 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 TNRC6AQ8NDV7 1962 aaKnown RBP1.22□□□□□ -2.21
NUP54-208ENST00000508604 TSC2P49815 1807 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 SLX4Q8IY92 1834 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 SLIT2O94813 1529 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 DDX60LQ5H9U9 1706 aaKnown RBP1.22□□□□□ -2.21
NUP54-208ENST00000508604 RGPD4Q7Z3J3 1758 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 TNS2Q63HR2 1409 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 MCM3APO60318 1980 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 PAPPAQ13219 1627 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 MUC21A0A0G2JKD1 596 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 LOC107984640A0A0U1RRK4 108 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 MUC21A0A140T8X8 626 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 FAM236DA0A1B0GTK5 79 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 TEX50A0A1B0GTY4 177 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 M0R1B8 84 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 FXYD1O00168 92 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 SOCS1O15524 211 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 ARL6IP5O75915 188 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 SNCGO76070 127 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 C1orf105O95561 183 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 CXorf1O96002 111 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 C1QAP02745 245 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 MT-ATP8P03928 68 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 CECR9P0C854 216 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 FAM236CP0DP71 79 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 BCL2P10415 239 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 CRYGAP11844 174 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 IGLL1P15814 213 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 GABRG2P18507 467 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 VDAC1P21796 283 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 LPAR6P43657 344 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 VDAC2P45880 294 aaPredicted RBP1.22□□□□□ -2.21
NUP54-208ENST00000508604 MARCKSL1P49006 195 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 PSMB3P49720 205 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 DAPP51397 102 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 SNRPGP62308 76 aaKnown RBP1.22□□□□□ -2.21
NUP54-208ENST00000508604 HERVK_113P63121 156 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 PLGLB1Q02325 96 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 ZNF90Q03938 601 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 LOXL1Q08397 574 aaPredicted RBP1.22□□□□□ -2.21
NUP54-208ENST00000508604 SLC38A11Q08AI6 406 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 DIAPH2-AS1Q14236 149 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 MSMO1Q15800 293 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 ZNF141Q15928 474 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 RRN3P1Q2M238 152 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 MPV17LQ2QL34 196 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 Q499Y3 187 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 FAM27D1Q5T7N8 215 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 Q5XG85 94 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 HRCT1Q6UXD1 115 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 TMEM14EPQ6UXP3 125 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 DNM1P46Q6ZS02 220 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 ZCCHC23Q6ZST2 131 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 TCF23Q7RTU1 214 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 MRPL55Q7Z7F7 128 aaKnown RBP1.22□□□□□ -2.21
NUP54-208ENST00000508604 C6orf223Q8N319 242 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 SLC25A45Q8N413 288 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 Q8N976 141 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 OR5H2Q8NGV7 314 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 OR4K13Q8NH42 304 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 OTOSQ8NHW6 89 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 CT55Q8WUE5 264 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 AQP3Q92482 292 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 RBMXL1Q96E39 390 aaKnown RBP1.22□□□□□ -2.21
NUP54-208ENST00000508604 NEURL3Q96EH8 262 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 LINC00526Q96FQ7 95 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 MCEEQ96PE7 176 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 LINC01587Q99440 93 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 MRPL20Q9BYC9 149 aaKnown RBP1.22□□□□□ -2.21
NUP54-208ENST00000508604 NMES1Q9C002 83 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 NAA60Q9H7X0 242 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 EDA2RQ9HAV5 297 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 BCL2L10Q9HD36 194 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 LSM7Q9UK45 103 aaKnown RBP1.22□□□□□ -2.21
NUP54-208ENST00000508604 PKIGQ9Y2B9 76 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 KLF13Q9Y2Y9 288 aaPredicted RBP1.22□□□□□ -2.21
NUP54-208ENST00000508604 CHCHD2Q9Y6H1 151 aaPredicted RBP1.22□□□□□ -2.21
NUP54-208ENST00000508604 PXMP4Q9Y6I8 212 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 BTAF1O14981 1849 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 PHF3Q92576 2039 aaKnown RBP1.22□□□□□ -2.21
NUP54-208ENST00000508604 SCN2AQ99250 2005 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 TMEM131Q92545 1883 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 PLXNA4Q9HCM2 1894 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 TJP1Q07157 1748 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 NWD2Q9ULI1 1742 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 TICRRQ7Z2Z1 1910 aa1.22□□□□□ -2.21
NUP54-208ENST00000508604 ADAMTSL1Q8N6G6 1762 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 ARFGEF2Q9Y6D5 1785 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 FANCMQ8IYD8 2048 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 DOCK3Q8IZD9 2030 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 THSD7BQ9C0I4 1608 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 BRCA1P38398 1863 aaKnown RBP1.21□□□□□ -2.22
NUP54-208ENST00000508604 KMT2EQ8IZD2 1858 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 NUP210Q8TEM1 1887 aaPredicted RBP1.21□□□□□ -2.22
NUP54-208ENST00000508604 FAM208AQ9UK61 1670 aaKnown RBP1.21□□□□□ -2.22
NUP54-208ENST00000508604 TRAV26-2A0A0B4J265 109 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 CCL15-CCL14A0A0B4J2E2 113 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 C3orf85A0A1B0GTC6 90 aa1.21□□□□□ -2.22
NUP54-208ENST00000508604 MYBPHLA2RUH7 354 aa1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms