RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 SLAMF6Q96DU3 332 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 TSC22D3Q99576 134 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 CST9LQ9H4G1 147 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 C8orf4Q9NR00 106 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 UFC1Q9Y3C8 167 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 NUMA1Q14980 2115 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 RIC1Q4ADV7 1423 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 SYCP2Q9BX26 1530 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 NRKQ7Z2Y5 1582 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 RIMBP3Q9UFD9 1639 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 TET3O43151 1660 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 PLCH1Q4KWH8 1693 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 RGPD1P0DJD0 1748 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 BCORQ6W2J9 1755 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 KIDINS220Q9ULH0 1771 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 CITO14578 2027 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 A0A087X0T9 212 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 TRAV3A0A0B4J244 114 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 SDCBPO00560 298 aaPredicted RBP1.54□□□□□ -2.16
USP53-204ENST00000507906 PIAS1O75925 651 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 ASAH2BP0C7U1 165 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 METTL15P1P0C7V9 234 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 ZNF705BP0CI00 300 aaPredicted RBP1.54□□□□□ -2.16
USP53-204ENST00000507906 YPEL3P61236 119 aaPredicted RBP1.54□□□□□ -2.16
USP53-204ENST00000507906 POU6F1Q14863 301 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 FP248Q71RG6 208 aaPredicted RBP1.54□□□□□ -2.16
USP53-204ENST00000507906 AAED1Q7RTV5 226 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 C3orf56Q8N813 242 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 OR4E2Q8NGC2 313 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 OR13D1Q8NGV5 346 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 OR10J5Q8NHC4 309 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 LZICQ8WZA0 190 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 BCL9LQ86UU0 1499 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 ABCC1P33527 1531 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 NWD1Q149M9 1564 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 SAMD9LQ8IVG5 1584 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 SETBP1Q9Y6X0 1596 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 RBBP6Q7Z6E9 1792 aaKnown RBP1.54□□□□□ -2.16
USP53-204ENST00000507906 PTPRBP23467 1997 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 MICAL3Q7RTP6 2002 aa1.54□□□□□ -2.16
USP53-204ENST00000507906 C19orf84I3L1E1 186 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 SMIM24O75264 130 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 TRPM2O94759 1503 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 ATP10BO94823 1461 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 ABCA8O94911 1581 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 FABP1P07148 127 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 PAEPP09466 180 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 COX6A1P12074 109 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 GNG11P61952 73 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 TROQ12816 1431 aaPredicted RBP1.53□□□□□ -2.16
USP53-204ENST00000507906 RRN3P1Q2M238 152 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 KIAA2026Q5HYC2 2103 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 NEXMIFQ5QGS0 1516 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 DPPA3Q6W0C5 159 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 C3orf62Q6ZUJ4 267 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 KDM3BQ7LBC6 1761 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 MON2Q7Z3U7 1717 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 ANKARQ7Z5J8 1434 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 TRAPPC6BQ86SZ2 158 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 RIMS1Q86UR5 1692 aaKnown RBP1.53□□□□□ -2.16
USP53-204ENST00000507906 DOCK3Q8IZD9 2030 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 HIST1H2BLQ99880 126 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 SLC50A1Q9BRV3 221 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 TRIOBPQ9H2D6 2365 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 CENPHQ9H3R5 247 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 CD163L1Q9NR16 1453 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 PHRF1Q9P1Y6 1649 aaKnown RBP1.53□□□□□ -2.16
USP53-204ENST00000507906 DLEC1Q9Y238 1755 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 PLXND1Q9Y4D7 1925 aa1.53□□□□□ -2.16
USP53-204ENST00000507906 PCNX2A6NKB5 2137 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 NALCNQ8IZF0 1738 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 C3P01024 1663 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 ZNF142P52746 1687 aaPredicted RBP1.52□□□□□ -2.17
USP53-204ENST00000507906 ADAMTS12P58397 1594 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 ZFYVE16Q7Z3T8 1539 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 DLC1Q96QB1 1528 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 MAGI1Q96QZ7 1491 aaPredicted RBP1.52□□□□□ -2.17
USP53-204ENST00000507906 MLH3Q9UHC1 1453 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 LOC105371267A0A1B0GV96 52 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 G3V2T6 193 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 M0R378 163 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 TAX1BP3O14907 124 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 OR2T1O43869 369 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 BANF1O75531 89 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 FAM107AO95990 144 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 CRPP02741 224 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 INSL3P51460 131 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 ARPC4P59998 168 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 TSNQ15631 228 aaKnown RBP1.52□□□□□ -2.17
USP53-204ENST00000507906 LYRM7Q5U5X0 104 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 SOSTDC1Q6X4U4 206 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 DEFB128Q7Z7B8 93 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 C15orf53Q8NAA6 179 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 OR13C6PQ8NH95 151 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 FAM172AQ8WUF8 416 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 MBD3L1Q8WWY6 194 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 CGREF1Q99674 301 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 ACER3Q9NUN7 267 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 FAIMQ9NVQ4 179 aa1.52□□□□□ -2.17
USP53-204ENST00000507906 PAIP2BQ9ULR5 123 aaKnown RBP1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms