RNA–Protein interactions for RNA: ENST00000494973.1

APTX-231, Transcript of aprataxin, human

TSL 4

Gene APTX, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-231	ENST00000494973	CXorf1	O96002	111 aa		10.31	□□□□□ -0.76
APTX-231	ENST00000494973	H2AFB1	P0C5Y9	115 aa		10.31	□□□□□ -0.76
APTX-231	ENST00000494973	STAG3L2	P0CL84	134 aa		10.31	□□□□□ -0.76
APTX-231	ENST00000494973	STAG3L3	P0CL85	134 aa		10.31	□□□□□ -0.76
APTX-231	ENST00000494973	CD33	P20138	364 aa		10.31	□□□□□ -0.76
APTX-231	ENST00000494973	PPT1	P50897	306 aa		10.31	□□□□□ -0.76
APTX-231	ENST00000494973	GCSAML	Q5JQS6	135 aa		10.31	□□□□□ -0.76
APTX-231	ENST00000494973	C16orf54	Q6UWD8	224 aa		10.31	□□□□□ -0.76
APTX-231	ENST00000494973	RAB24	Q969Q5	203 aa		10.31	□□□□□ -0.76
APTX-231	ENST00000494973	SCRT1	Q9BWW7	348 aa		10.31	□□□□□ -0.76
APTX-231	ENST00000494973	MAP1LC3B	Q9GZQ8	125 aa		10.31	□□□□□ -0.76
APTX-231	ENST00000494973	SEPSECS	Q9HD40	501 aa	Known RBP	10.31	□□□□□ -0.76
APTX-231	ENST00000494973	TRAV25	A0A0B4J276	109 aa		10.3	□□□□□ -0.76
APTX-231	ENST00000494973	OR7C2	O60412	319 aa		10.3	□□□□□ -0.76
APTX-231	ENST00000494973	ATF4	P18848	351 aa	Predicted RBP	10.3	□□□□□ -0.76
APTX-231	ENST00000494973	GUK1	Q16774	197 aa		10.3	□□□□□ -0.76
APTX-231	ENST00000494973	C9orf66	Q5T8R8	295 aa		10.3	□□□□□ -0.76
APTX-231	ENST00000494973	HIST2H2BD	Q6DRA6	164 aa		10.3	□□□□□ -0.76
APTX-231	ENST00000494973	MIR17HG	Q75NE6	70 aa		10.3	□□□□□ -0.76
APTX-231	ENST00000494973	SPATA3	Q8NHX4	192 aa		10.3	□□□□□ -0.76
APTX-231	ENST00000494973	MBD3L1	Q8WWY6	194 aa		10.3	□□□□□ -0.76
APTX-231	ENST00000494973	TMEM167B	Q9NRX6	74 aa		10.3	□□□□□ -0.76
APTX-231	ENST00000494973	RFNG	Q9Y644	331 aa		10.3	□□□□□ -0.76
APTX-231	ENST00000494973	FBN1	P35555	2871 aa	Known RBP	10.3	□□□□□ -0.76
APTX-231	ENST00000494973	TRAV1-1	A0A0B4J248	108 aa		10.29	□□□□□ -0.76
APTX-231	ENST00000494973	CSN3	P07498	182 aa		10.29	□□□□□ -0.76
APTX-231	ENST00000494973	PSMB3	P49720	205 aa		10.29	□□□□□ -0.76
APTX-231	ENST00000494973	PAFAH1B2	P68402	229 aa		10.29	□□□□□ -0.76
APTX-231	ENST00000494973	FAM74A1	Q5RGS3	127 aa		10.29	□□□□□ -0.76
APTX-231	ENST00000494973	SIGLEC15	Q6ZMC9	328 aa		10.29	□□□□□ -0.76
APTX-231	ENST00000494973	IL34	Q6ZMJ4	242 aa		10.29	□□□□□ -0.76
APTX-231	ENST00000494973	WFDC9	Q8NEX5	89 aa		10.29	□□□□□ -0.76
APTX-231	ENST00000494973	GLMP	Q8WWB7	406 aa		10.29	□□□□□ -0.76
APTX-231	ENST00000494973	MDFI	Q99750	246 aa		10.29	□□□□□ -0.76
APTX-231	ENST00000494973	PAXX	Q9BUH6	204 aa		10.29	□□□□□ -0.76
APTX-231	ENST00000494973	OR51M1	Q9H341	326 aa		10.29	□□□□□ -0.76
APTX-231	ENST00000494973	WNK1	Q9H4A3	2382 aa		10.29	□□□□□ -0.76
APTX-231	ENST00000494973		A0A087X0K7	114 aa		10.28	□□□□□ -0.76
APTX-231	ENST00000494973	TRAV2	A0A0B4J234	112 aa		10.28	□□□□□ -0.76
APTX-231	ENST00000494973	RGS13	O14921	159 aa		10.28	□□□□□ -0.76
APTX-231	ENST00000494973	SAP30	O75446	220 aa		10.28	□□□□□ -0.76
APTX-231	ENST00000494973	HIST1H1E	P10412	219 aa	Known RBP	10.28	□□□□□ -0.76
APTX-231	ENST00000494973	TAGLN2	P37802	199 aa	Known RBP	10.28	□□□□□ -0.76
APTX-231	ENST00000494973	UBE2L3	P68036	154 aa	Known RBP	10.28	□□□□□ -0.76
APTX-231	ENST00000494973	PDE6H	Q13956	83 aa		10.28	□□□□□ -0.76
APTX-231	ENST00000494973	SFT2D1	Q8WV19	159 aa		10.28	□□□□□ -0.76
APTX-231	ENST00000494973	SLC25A2	Q9BXI2	301 aa		10.28	□□□□□ -0.76
APTX-231	ENST00000494973	CLEC5A	Q9NY25	188 aa		10.28	□□□□□ -0.76
APTX-231	ENST00000494973	ZMAT5	Q9UDW3	170 aa	Known RBP	10.28	□□□□□ -0.76
APTX-231	ENST00000494973	ARL2-SNX15	V9GYD0	113 aa		10.28	□□□□□ -0.76
APTX-231	ENST00000494973	TENM1	Q9UKZ4	2725 aa		10.27	□□□□□ -0.76
APTX-231	ENST00000494973	ZNF785	A8K8V0	405 aa		10.27	□□□□□ -0.77
APTX-231	ENST00000494973	ZNF253	O75346	499 aa		10.27	□□□□□ -0.77
APTX-231	ENST00000494973	IFNA1	P01562	189 aa		10.27	□□□□□ -0.77
APTX-231	ENST00000494973	ARL14EPL	P0DKL9	152 aa		10.27	□□□□□ -0.77
APTX-231	ENST00000494973	GP9	P14770	177 aa		10.27	□□□□□ -0.77
APTX-231	ENST00000494973	ZNF726P1	Q15940	193 aa		10.27	□□□□□ -0.77
APTX-231	ENST00000494973	PRR31	Q5SQ13	230 aa		10.27	□□□□□ -0.77
APTX-231	ENST00000494973	SPATA31B1P	Q5VZV4	182 aa		10.27	□□□□□ -0.77
APTX-231	ENST00000494973	LCN12	Q6JVE5	192 aa		10.27	□□□□□ -0.77
APTX-231	ENST00000494973	LCN15	Q6UWW0	184 aa		10.27	□□□□□ -0.77
APTX-231	ENST00000494973	RBPMS2	Q6ZRY4	209 aa	Known RBP	10.27	□□□□□ -0.77
APTX-231	ENST00000494973	TCF24	Q7RTU0	167 aa		10.27	□□□□□ -0.77
APTX-231	ENST00000494973	FAM167A-AS1	Q96KT0	104 aa		10.27	□□□□□ -0.77
APTX-231	ENST00000494973	SLC50A1	Q9BRV3	221 aa		10.27	□□□□□ -0.77
APTX-231	ENST00000494973	HRH4	Q9H3N8	390 aa		10.27	□□□□□ -0.77
APTX-231	ENST00000494973	STAB1	Q9NY15	2570 aa		10.27	□□□□□ -0.77
APTX-231	ENST00000494973	IGHV3OR16-13	A0A075B7E8	117 aa		10.26	□□□□□ -0.77
APTX-231	ENST00000494973	IGHV3-49	A0A0A0MS15	119 aa		10.26	□□□□□ -0.77
APTX-231	ENST00000494973	IGHV3-74	A0A0B4J1X5	117 aa		10.26	□□□□□ -0.77
APTX-231	ENST00000494973	APOH	P02749	345 aa	Predicted RBP	10.26	□□□□□ -0.77
APTX-231	ENST00000494973	GCHFR	P30047	84 aa		10.26	□□□□□ -0.77
APTX-231	ENST00000494973	FHIT	P49789	147 aa		10.26	□□□□□ -0.77
APTX-231	ENST00000494973	RPL11	P62913	178 aa	Known RBP	10.26	□□□□□ -0.77
APTX-231	ENST00000494973	LEMD1	Q68G75	181 aa		10.26	□□□□□ -0.77
APTX-231	ENST00000494973	IQCF2	Q8IXL9	164 aa		10.26	□□□□□ -0.77
APTX-231	ENST00000494973	SPAG8	Q99932	426 aa	Predicted RBP	10.26	□□□□□ -0.77
APTX-231	ENST00000494973	NRN1	Q9NPD7	142 aa		10.26	□□□□□ -0.77
APTX-231	ENST00000494973	PLA2G2E	Q9NZK7	142 aa		10.26	□□□□□ -0.77
APTX-231	ENST00000494973	TRAV5	A0A0B4J249	113 aa		10.25	□□□□□ -0.77
APTX-231	ENST00000494973	IGHV3-66	A0A0C4DH42	116 aa		10.25	□□□□□ -0.77
APTX-231	ENST00000494973	TSPAN4	O14817	238 aa		10.25	□□□□□ -0.77
APTX-231	ENST00000494973	IGLV1-51	P01701	117 aa		10.25	□□□□□ -0.77
APTX-231	ENST00000494973	IGLC2	P0DOY2	106 aa		10.25	□□□□□ -0.77
APTX-231	ENST00000494973	PSG9	Q00887	426 aa		10.25	□□□□□ -0.77
APTX-231	ENST00000494973	DEFB114	Q30KQ6	69 aa		10.25	□□□□□ -0.77
APTX-231	ENST00000494973	MORN5	Q5VZ52	161 aa		10.25	□□□□□ -0.77
APTX-231	ENST00000494973	FAM90A2P	Q658T7	463 aa		10.25	□□□□□ -0.77
APTX-231	ENST00000494973	LYPD1	Q8N2G4	141 aa		10.25	□□□□□ -0.77
APTX-231	ENST00000494973	NKX6-2	Q9C056	277 aa	Predicted RBP	10.25	□□□□□ -0.77
APTX-231	ENST00000494973	MANBAL	Q9NQG1	85 aa		10.25	□□□□□ -0.77
APTX-231	ENST00000494973	MLX	Q9UH92	298 aa		10.25	□□□□□ -0.77
APTX-231	ENST00000494973	OR4C46	A6NHA9	309 aa		10.24	□□□□□ -0.77
APTX-231	ENST00000494973	DNASE2	O00115	360 aa	Predicted RBP	10.24	□□□□□ -0.77
APTX-231	ENST00000494973	MRPS12	O15235	138 aa	Known RBP	10.24	□□□□□ -0.77
APTX-231	ENST00000494973	HMGB3	O15347	200 aa	Known RBP	10.24	□□□□□ -0.77
APTX-231	ENST00000494973	NBEAP1	P0C6P0	100 aa		10.24	□□□□□ -0.77
APTX-231	ENST00000494973	ID1	P41134	155 aa		10.24	□□□□□ -0.77
APTX-231	ENST00000494973	CMC4	P56277	68 aa	Predicted RBP	10.24	□□□□□ -0.77
APTX-231	ENST00000494973	IFITM2	Q01629	132 aa		10.24	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms