RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 IGKV1-16P04430 117 aa14.36□□□□□ -0.11
NPHP4-209ENST00000489180 SLC25A20O43772 301 aa14.35□□□□□ -0.11
NPHP4-209ENST00000489180 AMN1Q8IY45 258 aa14.35□□□□□ -0.11
NPHP4-209ENST00000489180 RPRMLQ8N4K4 120 aa14.35□□□□□ -0.11
NPHP4-209ENST00000489180 TMEM158Q8WZ71 300 aa14.35□□□□□ -0.11
NPHP4-209ENST00000489180 C14orf178Q8N769 122 aaPredicted RBP14.35□□□□□ -0.11
NPHP4-209ENST00000489180 ZNF688P0C7X2 276 aa14.35□□□□□ -0.11
NPHP4-209ENST00000489180 RCHY1Q96PM5 261 aa14.35□□□□□ -0.11
NPHP4-209ENST00000489180 ERCC8Q13216 396 aa14.34□□□□□ -0.11
NPHP4-209ENST00000489180 BUB1B-PAK6H3BSN5 160 aa14.34□□□□□ -0.11
NPHP4-209ENST00000489180 FCN3O75636 299 aa14.34□□□□□ -0.11
NPHP4-209ENST00000489180 RNASE2P10153 161 aaKnown RBP14.34□□□□□ -0.11
NPHP4-209ENST00000489180 ZDBF2Q9HCK1 2354 aa14.34□□□□□ -0.11
NPHP4-209ENST00000489180 EREGO14944 169 aa14.34□□□□□ -0.11
NPHP4-209ENST00000489180 LY96Q9Y6Y9 160 aa14.34□□□□□ -0.11
NPHP4-209ENST00000489180 LY6HO94772 140 aa14.34□□□□□ -0.11
NPHP4-209ENST00000489180 IGHV3-53P01767 116 aa14.33□□□□□ -0.11
NPHP4-209ENST00000489180 ZNF415Q09FC8 603 aa14.33□□□□□ -0.11
NPHP4-209ENST00000489180 SIGLEC9Q9Y336 463 aa14.33□□□□□ -0.11
NPHP4-209ENST00000489180 IGKV1-6A0A0C4DH72 117 aa14.33□□□□□ -0.12
NPHP4-209ENST00000489180 LCNL1Q6ZST4 164 aa14.33□□□□□ -0.12
NPHP4-209ENST00000489180 A0A0G2JNJ9 132 aa14.33□□□□□ -0.12
NPHP4-209ENST00000489180 Q9UFV3 132 aa14.33□□□□□ -0.12
NPHP4-209ENST00000489180 ATXN8Q156A1 80 aa14.33□□□□□ -0.12
NPHP4-209ENST00000489180 CSTL1Q9H114 145 aa14.33□□□□□ -0.12
NPHP4-209ENST00000489180 KIR3DS1Q14943 382 aa14.32□□□□□ -0.12
NPHP4-209ENST00000489180 C5orf64Q2M2E5 130 aa14.32□□□□□ -0.12
NPHP4-209ENST00000489180 C1orf122Q6ZSJ8 110 aa14.32□□□□□ -0.12
NPHP4-209ENST00000489180 TMEM238C9JI98 176 aa14.32□□□□□ -0.12
NPHP4-209ENST00000489180 GGTLC3B5MD39 225 aa14.32□□□□□ -0.12
NPHP4-209ENST00000489180 MDS2Q8NDY4 140 aa14.32□□□□□ -0.12
NPHP4-209ENST00000489180 GATD1Q8NB37 220 aa14.31□□□□□ -0.12
NPHP4-209ENST00000489180 MRPL27Q9P0M9 148 aaKnown RBP14.31□□□□□ -0.12
NPHP4-209ENST00000489180 Q86TA4 180 aa14.31□□□□□ -0.12
NPHP4-209ENST00000489180 DPH3P1Q9H4G8 78 aa14.31□□□□□ -0.12
NPHP4-209ENST00000489180 A0A087WWL8 130 aa14.31□□□□□ -0.12
NPHP4-209ENST00000489180 WISP1O95388 367 aa14.31□□□□□ -0.12
NPHP4-209ENST00000489180 TOMM40O96008 361 aa14.31□□□□□ -0.12
NPHP4-209ENST00000489180 COL8A2P25067 703 aa14.31□□□□□ -0.12
NPHP4-209ENST00000489180 Q6ZS49 121 aa14.31□□□□□ -0.12
NPHP4-209ENST00000489180 POLR3KQ9Y2Y1 108 aaPredicted RBP14.31□□□□□ -0.12
NPHP4-209ENST00000489180 STPG4Q8N801 248 aa14.3□□□□□ -0.12
NPHP4-209ENST00000489180 H3BUX3 64 aa14.3□□□□□ -0.12
NPHP4-209ENST00000489180 ZC2HC1BQ5TFG8 222 aa14.3□□□□□ -0.12
NPHP4-209ENST00000489180 AKAP6Q13023 2319 aa14.3□□□□□ -0.12
NPHP4-209ENST00000489180 TDGF1P3P51864 188 aa14.3□□□□□ -0.12
NPHP4-209ENST00000489180 MORN3Q6PF18 240 aaPredicted RBP14.29□□□□□ -0.12
NPHP4-209ENST00000489180 TRGV1A0A0A0MS02 117 aa14.29□□□□□ -0.12
NPHP4-209ENST00000489180 ARMS2P0C7Q2 107 aa14.29□□□□□ -0.12
NPHP4-209ENST00000489180 ASCL4Q6XD76 172 aa14.29□□□□□ -0.12
NPHP4-209ENST00000489180 FOXL2NBQ6ZUU3 175 aa14.29□□□□□ -0.12
NPHP4-209ENST00000489180 CYYR1Q96J86 154 aa14.29□□□□□ -0.12
NPHP4-209ENST00000489180 LRRK1Q38SD2 2015 aa14.29□□□□□ -0.12
NPHP4-209ENST00000489180 CRPP02741 224 aa14.29□□□□□ -0.12
NPHP4-209ENST00000489180 WDR90Q96KV7 1748 aa14.29□□□□□ -0.12
NPHP4-209ENST00000489180 SAP30O75446 220 aa14.29□□□□□ -0.12
NPHP4-209ENST00000489180 CSRP1P21291 193 aaKnown RBP14.29□□□□□ -0.12
NPHP4-209ENST00000489180 UBE2V1Q13404 147 aa14.29□□□□□ -0.12
NPHP4-209ENST00000489180 S100A7L2Q5SY68 101 aa14.29□□□□□ -0.12
NPHP4-209ENST00000489180 GTSF1LQ9H1H1 148 aa14.29□□□□□ -0.12
NPHP4-209ENST00000489180 TEX43Q6ZNM6 134 aa14.28□□□□□ -0.12
NPHP4-209ENST00000489180 EFNA4P52798 201 aa14.28□□□□□ -0.12
NPHP4-209ENST00000489180 TMEM86BQ8N661 226 aa14.28□□□□□ -0.12
NPHP4-209ENST00000489180 TMEM213A2RRL7 107 aa14.28□□□□□ -0.12
NPHP4-209ENST00000489180 C9orf139Q6ZV77 190 aa14.28□□□□□ -0.12
NPHP4-209ENST00000489180 RNF5Q99942 180 aa14.28□□□□□ -0.12
NPHP4-209ENST00000489180 SPOCK3Q9BQ16 436 aa14.28□□□□□ -0.12
NPHP4-209ENST00000489180 LTBP1Q14766 1721 aa14.27□□□□□ -0.12
NPHP4-209ENST00000489180 C8orf49Q96NF6 230 aa14.27□□□□□ -0.12
NPHP4-209ENST00000489180 GVINP1Q7Z2Y8 2422 aa14.27□□□□□ -0.12
NPHP4-209ENST00000489180 TRBV7-1A0A0A6YYK4 115 aa14.27□□□□□ -0.12
NPHP4-209ENST00000489180 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.27□□□□□ -0.12
NPHP4-209ENST00000489180 PAX4O43316 350 aa14.27□□□□□ -0.12
NPHP4-209ENST00000489180 GAGE2BQ13066 116 aa14.27□□□□□ -0.12
NPHP4-209ENST00000489180 GAGE2EQ4V326 116 aa14.27□□□□□ -0.12
NPHP4-209ENST00000489180 GAGE2DQ9UEU5 116 aa14.27□□□□□ -0.12
NPHP4-209ENST00000489180 OCIAD2Q56VL3 154 aa14.27□□□□□ -0.13
NPHP4-209ENST00000489180 CHAC1Q9BUX1 264 aa14.27□□□□□ -0.13
NPHP4-209ENST00000489180 CEP250Q9BV73 2442 aa14.27□□□□□ -0.13
NPHP4-209ENST00000489180 COL4A6Q14031 1691 aa14.27□□□□□ -0.13
NPHP4-209ENST00000489180 VCYO14598 125 aa14.27□□□□□ -0.13
NPHP4-209ENST00000489180 MINOS1Q5TGZ0 78 aa14.27□□□□□ -0.13
NPHP4-209ENST00000489180 MINOS1-NBL1R4GNA1 71 aa14.27□□□□□ -0.13
NPHP4-209ENST00000489180 A0A1W2PPI3 338 aa14.26□□□□□ -0.13
NPHP4-209ENST00000489180 LINC01559Q495D7 138 aa14.26□□□□□ -0.13
NPHP4-209ENST00000489180 ZFAND6Q6FIF0 208 aa14.26□□□□□ -0.13
NPHP4-209ENST00000489180 PHLDA1Q8WV24 401 aaPredicted RBP14.26□□□□□ -0.13
NPHP4-209ENST00000489180 ESDP10768 282 aa14.26□□□□□ -0.13
NPHP4-209ENST00000489180 RPL35AP18077 110 aaKnown RBP14.26□□□□□ -0.13
NPHP4-209ENST00000489180 PLEKHB2Q96CS7 222 aa14.26□□□□□ -0.13
NPHP4-209ENST00000489180 FER1L5A0AVI2 2057 aa14.26□□□□□ -0.13
NPHP4-209ENST00000489180 PHF3Q92576 2039 aaKnown RBP14.26□□□□□ -0.13
NPHP4-209ENST00000489180 CFHR2P36980 270 aa14.26□□□□□ -0.13
NPHP4-209ENST00000489180 LINC00477Q96M19 166 aa14.25□□□□□ -0.13
NPHP4-209ENST00000489180 HIST1H4AP62805 103 aaKnown RBP14.25□□□□□ -0.13
NPHP4-209ENST00000489180 UBE2E2Q96LR5 201 aa14.25□□□□□ -0.13
NPHP4-209ENST00000489180 PTPRDP23468 1912 aa14.25□□□□□ -0.13
NPHP4-209ENST00000489180 THADAQ6YHU6 1953 aa14.25□□□□□ -0.13
NPHP4-209ENST00000489180 ASPHD1Q5U4P2 390 aa14.25□□□□□ -0.13
NPHP4-209ENST00000489180 C2orf82Q6UX34 121 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms