RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 TAS2R60P59551 318 aa10.56□□□□□ -0.72
MCF2L-228ENST00000487354 SURF2Q15527 256 aaPredicted RBP10.56□□□□□ -0.72
MCF2L-228ENST00000487354 GPR141Q7Z602 305 aa10.56□□□□□ -0.72
MCF2L-228ENST00000487354 RXFP4Q8TDU9 374 aa10.56□□□□□ -0.72
MCF2L-228ENST00000487354 ZNF503Q96F45 646 aa10.56□□□□□ -0.72
MCF2L-228ENST00000487354 C16orf74Q96GX8 76 aa10.56□□□□□ -0.72
MCF2L-228ENST00000487354 EXTL2Q9UBQ6 330 aa10.56□□□□□ -0.72
MCF2L-228ENST00000487354 SLC45A2Q9UMX9 530 aa10.56□□□□□ -0.72
MCF2L-228ENST00000487354 FAM25AB3EWG3 89 aa10.55□□□□□ -0.72
MCF2L-228ENST00000487354 FAM25CB3EWG5 89 aa10.55□□□□□ -0.72
MCF2L-228ENST00000487354 FAM25GB3EWG6 89 aa10.55□□□□□ -0.72
MCF2L-228ENST00000487354 ZNF701M0R085 212 aaPredicted RBP10.55□□□□□ -0.72
MCF2L-228ENST00000487354 GATA2P23769 480 aaPredicted RBP10.55□□□□□ -0.72
MCF2L-228ENST00000487354 CCR6P51684 374 aa10.55□□□□□ -0.72
MCF2L-228ENST00000487354 SMCO1Q147U7 214 aa10.55□□□□□ -0.72
MCF2L-228ENST00000487354 LYZL2Q7Z4W2 148 aa10.55□□□□□ -0.72
MCF2L-228ENST00000487354 OR4D5Q8NGN0 318 aa10.55□□□□□ -0.72
MCF2L-228ENST00000487354 GNPNAT1Q96EK6 184 aaPredicted RBP10.55□□□□□ -0.72
MCF2L-228ENST00000487354 NOP10Q9NPE3 64 aaKnown RBP10.55□□□□□ -0.72
MCF2L-228ENST00000487354 CACFD1Q9UGQ2 172 aa10.55□□□□□ -0.72
MCF2L-228ENST00000487354 TIMM8BQ9Y5J9 83 aaPredicted RBP10.55□□□□□ -0.72
MCF2L-228ENST00000487354 A0A0J9YY99 117 aa10.54□□□□□ -0.72
MCF2L-228ENST00000487354 GABARAPH6UMI1 98 aa10.54□□□□□ -0.72
MCF2L-228ENST00000487354 GABARAPO95166 117 aa10.54□□□□□ -0.72
MCF2L-228ENST00000487354 FABP1P07148 127 aa10.54□□□□□ -0.72
MCF2L-228ENST00000487354 M6PRP20645 277 aa10.54□□□□□ -0.72
MCF2L-228ENST00000487354 KIR3DS1Q14943 382 aa10.54□□□□□ -0.72
MCF2L-228ENST00000487354 TMEM256Q8N2U0 113 aa10.54□□□□□ -0.72
MCF2L-228ENST00000487354 LINC01587Q99440 93 aa10.54□□□□□ -0.72
MCF2L-228ENST00000487354 FUNDC2Q9BWH2 189 aa10.54□□□□□ -0.72
MCF2L-228ENST00000487354 A0A0B4J2A0 478 aa10.53□□□□□ -0.72
MCF2L-228ENST00000487354 PITX3O75364 302 aa10.53□□□□□ -0.72
MCF2L-228ENST00000487354 ATP5IP56385 69 aaPredicted RBP10.53□□□□□ -0.72
MCF2L-228ENST00000487354 KRTAP10-1P60331 282 aa10.53□□□□□ -0.72
MCF2L-228ENST00000487354 OR1B1Q8NGR6 318 aa10.53□□□□□ -0.72
MCF2L-228ENST00000487354 TMEM263Q8WUH6 116 aaKnown RBP10.53□□□□□ -0.72
MCF2L-228ENST00000487354 MIXL1Q9H2W2 232 aa10.53□□□□□ -0.72
MCF2L-228ENST00000487354 SHPKQ9UHJ6 478 aa10.53□□□□□ -0.72
MCF2L-228ENST00000487354 H3BRN7 92 aa10.52□□□□□ -0.73
MCF2L-228ENST00000487354 HTN1P15515 57 aa10.52□□□□□ -0.73
MCF2L-228ENST00000487354 HIST1H1AQ02539 215 aaPredicted RBP10.52□□□□□ -0.73
MCF2L-228ENST00000487354 OR5I1Q13606 314 aa10.52□□□□□ -0.73
MCF2L-228ENST00000487354 TMEM144Q7Z5S9 345 aa10.52□□□□□ -0.73
MCF2L-228ENST00000487354 ZNF738Q8NE65 137 aa10.52□□□□□ -0.73
MCF2L-228ENST00000487354 OR8A1Q8NGG7 326 aa10.52□□□□□ -0.73
MCF2L-228ENST00000487354 DNAH8Q96JB1 4490 aa10.52□□□□□ -0.73
MCF2L-228ENST00000487354 H3BNG1 76 aa10.51□□□□□ -0.73
MCF2L-228ENST00000487354 IAPPP10997 89 aa10.51□□□□□ -0.73
MCF2L-228ENST00000487354 CXCL3P19876 107 aa10.51□□□□□ -0.73
MCF2L-228ENST00000487354 SSBP1Q04837 148 aaKnown RBP10.51□□□□□ -0.73
MCF2L-228ENST00000487354 ZNF493Q6ZR52 646 aa10.51□□□□□ -0.73
MCF2L-228ENST00000487354 GPR82Q96P67 336 aa10.51□□□□□ -0.73
MCF2L-228ENST00000487354 CFDP00746 253 aaPredicted RBP10.5□□□□□ -0.73
MCF2L-228ENST00000487354 ZNF182P17025 639 aaPredicted RBP10.5□□□□□ -0.73
MCF2L-228ENST00000487354 ORM2P19652 201 aa10.5□□□□□ -0.73
MCF2L-228ENST00000487354 GGNBP1Q5YKI7 109 aa10.5□□□□□ -0.73
MCF2L-228ENST00000487354 CDPF1Q6NVV7 123 aa10.5□□□□□ -0.73
MCF2L-228ENST00000487354 MZT2AQ6P582 158 aa10.5□□□□□ -0.73
MCF2L-228ENST00000487354 OR51S1Q8NGJ8 323 aa10.5□□□□□ -0.73
MCF2L-228ENST00000487354 OR10J6PQ8NGY7 276 aa10.5□□□□□ -0.73
MCF2L-228ENST00000487354 VSIG2Q96IQ7 327 aa10.5□□□□□ -0.73
MCF2L-228ENST00000487354 NAA50Q9GZZ1 169 aaKnown RBP10.5□□□□□ -0.73
MCF2L-228ENST00000487354 PGPEP1Q9NXJ5 209 aa10.5□□□□□ -0.73
MCF2L-228ENST00000487354 MDFICQ9P1T7 246 aa10.5□□□□□ -0.73
MCF2L-228ENST00000487354 HMCN2Q8NDA2 5059 aa10.49□□□□□ -0.73
MCF2L-228ENST00000487354 A0A087X0K7 114 aa10.49□□□□□ -0.73
MCF2L-228ENST00000487354 A0A096LPF7 62 aa10.49□□□□□ -0.73
MCF2L-228ENST00000487354 DISC1C4P0D8 188 aa10.49□□□□□ -0.73
MCF2L-228ENST00000487354 DNAH10OSP0CZ25 163 aa10.49□□□□□ -0.73
MCF2L-228ENST00000487354 CDKN1BP46527 198 aa10.49□□□□□ -0.73
MCF2L-228ENST00000487354 FGL1Q08830 312 aa10.49□□□□□ -0.73
MCF2L-228ENST00000487354 SMIM4Q8WVI0 70 aa10.49□□□□□ -0.73
MCF2L-228ENST00000487354 FRZBQ92765 325 aa10.49□□□□□ -0.73
MCF2L-228ENST00000487354 SHANK2-AS3Q9BTD1 123 aa10.49□□□□□ -0.73
MCF2L-228ENST00000487354 PARD6GQ9BYG4 376 aaPredicted RBP10.49□□□□□ -0.73
MCF2L-228ENST00000487354 TMPRSS5Q9H3S3 457 aa10.49□□□□□ -0.73
MCF2L-228ENST00000487354 TNFRSF18Q9Y5U5 241 aa10.49□□□□□ -0.73
MCF2L-228ENST00000487354 A0A087WXM4 84 aa10.48□□□□□ -0.73
MCF2L-228ENST00000487354 GAGE12BA1L429 117 aa10.48□□□□□ -0.73
MCF2L-228ENST00000487354 H7BYZ3 331 aa10.48□□□□□ -0.73
MCF2L-228ENST00000487354 MRPS12O15235 138 aaKnown RBP10.48□□□□□ -0.73
MCF2L-228ENST00000487354 GAGE7O76087 117 aa10.48□□□□□ -0.73
MCF2L-228ENST00000487354 GAGE12FP0CL80 117 aa10.48□□□□□ -0.73
MCF2L-228ENST00000487354 GAGE12GP0CL81 117 aa10.48□□□□□ -0.73
MCF2L-228ENST00000487354 GAGE12IP0CL82 117 aa10.48□□□□□ -0.73
MCF2L-228ENST00000487354 AKAIN1P0CW23 69 aa10.48□□□□□ -0.73
MCF2L-228ENST00000487354 RHOBP62745 196 aa10.48□□□□□ -0.73
MCF2L-228ENST00000487354 PSG3Q16557 428 aa10.48□□□□□ -0.73
MCF2L-228ENST00000487354 CTF1Q16619 201 aa10.48□□□□□ -0.73
MCF2L-228ENST00000487354 BPIFCQ8NFQ6 507 aa10.48□□□□□ -0.73
MCF2L-228ENST00000487354 OR1S1Q8NH92 325 aa10.48□□□□□ -0.73
MCF2L-228ENST00000487354 C18orf15Q96N68 181 aa10.48□□□□□ -0.73
MCF2L-228ENST00000487354 TMEM147Q9BVK8 224 aa10.48□□□□□ -0.73
MCF2L-228ENST00000487354 SMR3BP02814 79 aaPredicted RBP10.47□□□□□ -0.73
MCF2L-228ENST00000487354 RAB11AP62491 216 aa10.47□□□□□ -0.73
MCF2L-228ENST00000487354 GFI1BQ5VTD9 330 aa10.47□□□□□ -0.73
MCF2L-228ENST00000487354 C15orf40Q8WUR7 153 aa10.47□□□□□ -0.73
MCF2L-228ENST00000487354 PRRT1Q99946 306 aa10.47□□□□□ -0.73
MCF2L-228ENST00000487354 UBR4Q5T4S7 5183 aa10.46□□□□□ -0.73
MCF2L-228ENST00000487354 AKR1C4P17516 323 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms