RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 H3BUX3 64 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 GATA4P43694 442 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 ITLN2Q8WWU7 325 aaPredicted RBP8.97□□□□□ -0.97
HDAC6-228ENST00000486227 IGF2RP11717 2491 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 TRAV5A0A0B4J249 113 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 A0A1B0GUT8 65 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 RPL13AP40429 203 aaKnown RBP8.97□□□□□ -0.97
HDAC6-228ENST00000486227 SPATA31B1PQ5VZV4 182 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 TEX43Q6ZNM6 134 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 OR5A1Q8NGJ0 315 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 Q9H3A6 140 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 IGLC2P0DOY2 106 aa8.96□□□□□ -0.97
HDAC6-228ENST00000486227 IGLC3P0DOY3 106 aa8.96□□□□□ -0.97
HDAC6-228ENST00000486227 HERVK_113P61574 105 aa8.96□□□□□ -0.97
HDAC6-228ENST00000486227 GNG5P63218 68 aa8.96□□□□□ -0.97
HDAC6-228ENST00000486227 OR2K2Q8NGT1 345 aa8.96□□□□□ -0.97
HDAC6-228ENST00000486227 FGF23Q9GZV9 251 aaPredicted RBP8.96□□□□□ -0.97
HDAC6-228ENST00000486227 MAP1LC3AQ9H492 121 aa8.96□□□□□ -0.97
HDAC6-228ENST00000486227 KIAA1549LQ6ZVL6 1849 aa8.96□□□□□ -0.97
HDAC6-228ENST00000486227 TPTE2P1Q5T6R2 138 aa8.96□□□□□ -0.97
HDAC6-228ENST00000486227 RNF125Q96EQ8 232 aa8.96□□□□□ -0.97
HDAC6-228ENST00000486227 MGST2Q99735 147 aa8.96□□□□□ -0.97
HDAC6-228ENST00000486227 IGLV3-9A0A075B6K5 115 aa8.96□□□□□ -0.98
HDAC6-228ENST00000486227 MMP23AO75900 390 aa8.96□□□□□ -0.98
HDAC6-228ENST00000486227 WISP2O76076 250 aa8.96□□□□□ -0.98
HDAC6-228ENST00000486227 GATA3P23771 443 aa8.96□□□□□ -0.98
HDAC6-228ENST00000486227 PLA2G5P39877 138 aa8.96□□□□□ -0.98
HDAC6-228ENST00000486227 RHOGP84095 191 aa8.96□□□□□ -0.98
HDAC6-228ENST00000486227 MPV17L2Q567V2 206 aa8.96□□□□□ -0.98
HDAC6-228ENST00000486227 KLF17Q5JT82 389 aaPredicted RBP8.96□□□□□ -0.98
HDAC6-228ENST00000486227 KIR3DL3Q8N743 410 aa8.96□□□□□ -0.98
HDAC6-228ENST00000486227 SEPSECSQ9HD40 501 aaKnown RBP8.96□□□□□ -0.98
HDAC6-228ENST00000486227 DKK4Q9UBT3 224 aa8.96□□□□□ -0.98
HDAC6-228ENST00000486227 PHLDA3Q9Y5J5 127 aa8.96□□□□□ -0.98
HDAC6-228ENST00000486227 A0A1B0GW15 77 aa8.96□□□□□ -0.98
HDAC6-228ENST00000486227 NPFFO15130 113 aa8.96□□□□□ -0.98
HDAC6-228ENST00000486227 RIPPLY3P57055 190 aa8.96□□□□□ -0.98
HDAC6-228ENST00000486227 MLANAQ16655 118 aa8.96□□□□□ -0.98
HDAC6-228ENST00000486227 NSUN5P1Q3KNT7 163 aa8.96□□□□□ -0.98
HDAC6-228ENST00000486227 C3orf36Q3SXR2 165 aa8.96□□□□□ -0.98
HDAC6-228ENST00000486227 TSKUQ8WUA8 353 aa8.96□□□□□ -0.98
HDAC6-228ENST00000486227 FNDC4Q9H6D8 234 aaPredicted RBP8.96□□□□□ -0.98
HDAC6-228ENST00000486227 ALPK3Q96L96 1907 aa8.95□□□□□ -0.98
HDAC6-228ENST00000486227 BUB1B-PAK6H3BSN5 160 aa8.95□□□□□ -0.98
HDAC6-228ENST00000486227 IGKV1-39P01597 117 aa8.95□□□□□ -0.98
HDAC6-228ENST00000486227 IGKV1D-39P04432 117 aa8.95□□□□□ -0.98
HDAC6-228ENST00000486227 MSMBP08118 114 aa8.95□□□□□ -0.98
HDAC6-228ENST00000486227 TCF24Q7RTU0 167 aa8.95□□□□□ -0.98
HDAC6-228ENST00000486227 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.95□□□□□ -0.98
HDAC6-228ENST00000486227 AREGP15514 252 aa8.95□□□□□ -0.98
HDAC6-228ENST00000486227 DLX1P56177 255 aa8.95□□□□□ -0.98
HDAC6-228ENST00000486227 HIST1H4GQ99525 98 aa8.95□□□□□ -0.98
HDAC6-228ENST00000486227 ATRXP46100 2492 aa8.95□□□□□ -0.98
HDAC6-228ENST00000486227 RPS20P60866 119 aaKnown RBP8.95□□□□□ -0.98
HDAC6-228ENST00000486227 FAM159AQ6UWV7 190 aa8.95□□□□□ -0.98
HDAC6-228ENST00000486227 TMEM219Q86XT9 240 aa8.95□□□□□ -0.98
HDAC6-228ENST00000486227 FMC1Q96HJ9 113 aa8.95□□□□□ -0.98
HDAC6-228ENST00000486227 PSMB11A5LHX3 300 aa8.95□□□□□ -0.98
HDAC6-228ENST00000486227 CA1P00915 261 aaPredicted RBP8.95□□□□□ -0.98
HDAC6-228ENST00000486227 TRAV41A0A0B4J266 112 aa8.94□□□□□ -0.98
HDAC6-228ENST00000486227 PRB4P10163 310 aaPredicted RBP8.94□□□□□ -0.98
HDAC6-228ENST00000486227 CFHR2P36980 270 aa8.94□□□□□ -0.98
HDAC6-228ENST00000486227 PSMB2P49721 201 aa8.94□□□□□ -0.98
HDAC6-228ENST00000486227 ZNF841Q6ZN19 808 aa8.94□□□□□ -0.98
HDAC6-228ENST00000486227 Q8NFD4 153 aa8.94□□□□□ -0.98
HDAC6-228ENST00000486227 Q8TCH9 128 aa8.94□□□□□ -0.98
HDAC6-228ENST00000486227 Q96MF0 132 aa8.94□□□□□ -0.98
HDAC6-228ENST00000486227 NPIPB6E9PJ23 425 aa8.94□□□□□ -0.98
HDAC6-228ENST00000486227 CEACAM4O75871 244 aa8.94□□□□□ -0.98
HDAC6-228ENST00000486227 PVRIGQ6DKI7 326 aa8.94□□□□□ -0.98
HDAC6-228ENST00000486227 SIGLEC9Q9Y336 463 aa8.94□□□□□ -0.98
HDAC6-228ENST00000486227 MUC21A0A0G2JKD1 596 aa8.94□□□□□ -0.98
HDAC6-228ENST00000486227 MUC21A0A140T8X8 626 aa8.94□□□□□ -0.98
HDAC6-228ENST00000486227 MUC21Q5SSG8 566 aa8.94□□□□□ -0.98
HDAC6-228ENST00000486227 Q6AWC8 147 aa8.94□□□□□ -0.98
HDAC6-228ENST00000486227 C3orf56Q8N813 242 aa8.94□□□□□ -0.98
HDAC6-228ENST00000486227 CSPG4Q6UVK1 2322 aa8.94□□□□□ -0.98
HDAC6-228ENST00000486227 PRELID3AQ96N28 172 aa8.93□□□□□ -0.98
HDAC6-228ENST00000486227 PSG1P11464 419 aa8.93□□□□□ -0.98
HDAC6-228ENST00000486227 C17orf58Q2M2W7 97 aa8.93□□□□□ -0.98
HDAC6-228ENST00000486227 LOC107984156A0A0G2JMH3 177 aa8.93□□□□□ -0.98
HDAC6-228ENST00000486227 OCIAD2Q56VL3 154 aa8.93□□□□□ -0.98
HDAC6-228ENST00000486227 ARL17AQ8IVW1 177 aa8.93□□□□□ -0.98
HDAC6-228ENST00000486227 EPDR1Q9UM22 224 aa8.93□□□□□ -0.98
HDAC6-228ENST00000486227 CD5LO43866 347 aa8.93□□□□□ -0.98
HDAC6-228ENST00000486227 PRB1P04280 392 aa8.93□□□□□ -0.98
HDAC6-228ENST00000486227 HSD52Q0P140 79 aa8.93□□□□□ -0.98
HDAC6-228ENST00000486227 C11orf53Q8IXP5 236 aa8.93□□□□□ -0.98
HDAC6-228ENST00000486227 RNF5Q99942 180 aa8.93□□□□□ -0.98
HDAC6-228ENST00000486227 PTPRSQ13332 1948 aa8.93□□□□□ -0.98
HDAC6-228ENST00000486227 C15orf65H3BRN8 121 aa8.92□□□□□ -0.98
HDAC6-228ENST00000486227 H3BVH4 76 aa8.92□□□□□ -0.98
HDAC6-228ENST00000486227 PRTN3P24158 256 aa8.92□□□□□ -0.98
HDAC6-228ENST00000486227 C5orf64Q2M2E5 130 aa8.92□□□□□ -0.98
HDAC6-228ENST00000486227 CST9LQ9H4G1 147 aa8.92□□□□□ -0.98
HDAC6-228ENST00000486227 TMEM131Q92545 1883 aa8.92□□□□□ -0.98
HDAC6-228ENST00000486227 GAGE12BA1L429 117 aa8.92□□□□□ -0.98
HDAC6-228ENST00000486227 RNASE2P10153 161 aaKnown RBP8.92□□□□□ -0.98
HDAC6-228ENST00000486227 ZNF134P52741 427 aa8.92□□□□□ -0.98
HDAC6-228ENST00000486227 TTC9CQ8N5M4 171 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms